View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_4 (Length: 548)
Name: NF6373_high_4
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Complemental strand, 4396942 - 4396414
Alignment:
| Q |
11 |
catcatcataaccaattgctacacgtggaaacccaagaatagattgcatgacggtagcaggcgagtcagaatcttcatcgctttcgctgttctcagaccc |
110 |
Q |
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| T |
4396942 |
catcatcataaccaattgctacacgtggaaacccaagaatagattgcatgacggtagcaggtgagtcagaatcttcatcgctttcgctgttctcagaccc |
4396843 |
T |
|
| Q |
111 |
gcaggaatcagcatgtctattccacaaacgatcaccctttgtctcagcatttacaacaccgatcttaggcagtgtaacagccattttccagattgcgacg |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4396842 |
gcaggaatcaacatgtctattccacaaacgatcaccctttgtctcagcatttacaacaccgatcttaggcagtgtaacagccattttccagattgcgatg |
4396743 |
T |
|
| Q |
211 |
ccatctgactctagcactgtctataaacacataataaatatagttaagtcctgaaaaaactaaatggcagcaacaataattaaacaaaaaatgaagggga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4396742 |
ccatctgactctagcactgtctataaacacataataaatatagttaagtcctgaaaaaactaaatggcagcaacaataactaaacaaaaaatgaagggga |
4396643 |
T |
|
| Q |
311 |
cctgcaatatggccctgttccaatgatggacctcatgcactgactggtataatggtgcacccattataccagctctcatttacactgtatgttaccagca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4396642 |
cctgcaatatggccctgttccaatgatggacctcatgcactgactggtataatggtgcacccattataccagctctcatttacactgtttgttaccagca |
4396543 |
T |
|
| Q |
411 |
ataatattaactttttcttcatagcaacaaaaaactgaactaacatactataccaaattttcctcaagagtaactcttttctaaatagtccatattatta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4396542 |
ataatattaactttttcttcatagcaacaaaaaactgaactaacatactataccaaatttacctcaagagtaactcttttctaaatagtccatatcatta |
4396443 |
T |
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| Q |
511 |
aatgcactctttcaacatcatcatcataa |
539 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4396442 |
aatgcactctttcaacatcatcatcataa |
4396414 |
T |
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