View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_5 (Length: 497)
Name: NF6373_high_5
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 3745105 - 3744620
Alignment:
| Q |
1 |
tcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745105 |
tcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcg |
3745006 |
T |
|
| Q |
101 |
tgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745005 |
tgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaa |
3744906 |
T |
|
| Q |
201 |
agaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744905 |
agaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
3744806 |
T |
|
| Q |
301 |
gtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcagattgcttgaatttttg |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
3744805 |
gtttgtcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaaacctagaaccattcaggttcaggttgcttgaatttttg |
3744706 |
T |
|
| Q |
401 |
ttttgaataatgatgtagtgtatgtgtgatggtctttgggggcagaagagtaccaggttgttttttaaggtcgtgcttgtgtgatg |
486 |
Q |
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| T |
3744705 |
ttttgaataatgatgtagtgtatgtgtgatggtctttgggggcagaagagtactaggttgttttttaaggtcgtgcttgtgtgatg |
3744620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 4084453 - 4084497
Alignment:
| Q |
350 |
ctcagcctaagaagcccagaaccattcaagttcagattgcttgaa |
394 |
Q |
| |
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| T |
4084453 |
ctcagcctaagaaacccagaactattcaggttcagattgcttgaa |
4084497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 88 - 393
Target Start/End: Complemental strand, 48303219 - 48302914
Alignment:
| Q |
88 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
187 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
|
| Q |
188 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactga |
287 |
Q |
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| ||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||| | || ||||||||| || ||| |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgctgatgttga |
48303023 |
T |
|
| Q |
288 |
---tgctgtttctgctgtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcag |
384 |
Q |
| |
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|| |||||||||||||| ||||||||| ||||| | |||||||||| | || |||||||||||| | ||||||||||| | ||| ||||| ||| || |
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| T |
48303022 |
aggtggtgtttctgctgtttgtcaagatggtgttcttactgttactgttaataagttgcctcctcctgaacctaagaagcctaaaactattcaggttaag |
48302923 |
T |
|
| Q |
385 |
attgcttga |
393 |
Q |
| |
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|||||||| |
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| T |
48302922 |
gttgcttga |
48302914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
88 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
187 |
Q |
| |
|
|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
|
| Q |
188 |
gggaagaag |
196 |
Q |
| |
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||||||||| |
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| T |
10462262 |
gggaagaag |
10462270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
73 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
172 |
Q |
| |
|
|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
|
| Q |
173 |
gcggagagaggaagagggaagaag |
196 |
Q |
| |
|
||| ||||||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 10462342 - 10462434
Alignment:
| Q |
265 |
cttcctgagaatgctaatactgatgctgtttctgctgtttctcaagatggggttctgagtgttactgttc---agaaattgcctcctcctcag |
354 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| | || ||||||||| || | |||||||| || |||||||||||||||||||| |
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| T |
10462342 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgttactgctctcaagaaattgcctcctcctcag |
10462434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
151 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
230 |
Q |
| |
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||||| || ||| |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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