View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_13 (Length: 359)
Name: NF6373_low_13
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 4177655 - 4177977
Alignment:
| Q |
16 |
aaagtaacaccaaagagtgtaagatcttcatcataaatccatttcttcagctcatgatacgaacccgaaagagttggatcaagaacacactcaaccattg |
115 |
Q |
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| T |
4177655 |
aaagtaacaccaaagagtgtaagatcttcctcataaatccatttcttcagctcatgatacgaacccgaaagagttggatcaagaacacactcaaccattg |
4177754 |
T |
|
| Q |
116 |
gtgctaaacaaagatcactgcctctaacaagaagctctgaagcaacagtgagagcataagactcttcttcgtttgtaattatttcaaagaatccgttgtg |
215 |
Q |
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| T |
4177755 |
gtgctaaacaaagatcactacctctaacaagaagctctgaagcaacagtgagagcataagactcttcttcttttgtaattatctcaaagaatccgttgtg |
4177854 |
T |
|
| Q |
216 |
cgcgaggtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaatttgaaagggaaattggtttgccatgattg |
315 |
Q |
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| T |
4177855 |
cgcgaggtaacgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaatttgaaagtgaaattggtttgccatgattg |
4177954 |
T |
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| Q |
316 |
tgaataatatttggtatgttcat |
338 |
Q |
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| T |
4177955 |
tgaataatatttggtatgttcat |
4177977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 37 - 342
Target Start/End: Complemental strand, 4159949 - 4159629
Alignment:
| Q |
37 |
agatcttcatcataaatccatttcttcagctcatgatacgaacccgaaagagttggatcaagaacacactcaaccattggtgctaaacaaagatcactgc |
136 |
Q |
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| T |
4159949 |
agatcttcctcataaacccatttctttaagttatgaaatgaagttgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttc |
4159850 |
T |
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| Q |
137 |
ctctaacaagaagctctgaagcaacagtgagagcataagactcttcttcgttt---------------gtaattatttcaaagaatccgttgtgcgcgag |
221 |
Q |
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| T |
4159849 |
ctttaacaagaagctctgaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgag |
4159750 |
T |
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| Q |
222 |
gtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaattgaaactaaatttgaaagggaaattggtttgccatgattgtgaata |
321 |
Q |
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||| |||||||||||| |||||||| | | ||| | ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||||| ||| |
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| T |
4159749 |
gtaacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtggata |
4159650 |
T |
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| Q |
322 |
atatttggtatgttcatctca |
342 |
Q |
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| T |
4159649 |
atatttggtatgttcatctca |
4159629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 334
Target Start/End: Original strand, 4172107 - 4172365
Alignment:
| Q |
91 |
ggatcaagaacacactcaaccattggtgctaaacaaagatcactgcctctaacaagaagctctgaagcaacagtgagagcataagactcttcttcgttt- |
189 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| | ||| |||||||||||||||||| ||| ||||||||||||| |||||||| ||| |
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| T |
4172107 |
ggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctctgaagtaactgtgagagcataagcttcttcttcatttt |
4172206 |
T |
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| Q |
190 |
--------------gtaattatttcaaagaatccgttgtgcgcgaggtagcgcatgagacgccgcacgttacctattttcgacgatggaacttgaagaat |
275 |
Q |
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|| | ||| ||||||||||| ||||| || ||| |||||||||||| |||||||| | | ||| | ||||||| ||||||||| |
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| T |
4172207 |
ccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgctgcacgttatcgactttggttgatggaatttgaagaat |
4172306 |
T |
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| Q |
276 |
tgaaactaaatttgaaagggaaattggtttgccatgattgtgaataatatttggtatgt |
334 |
Q |
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||||||||| |||||||| | |||||||||||||||||||| |||||| ||||||||| |
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| T |
4172307 |
tgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatgt |
4172365 |
T |
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