View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_16 (Length: 345)
Name: NF6373_low_16
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
| Q |
22 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
121 |
Q |
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| T |
4877533 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
4877632 |
T |
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| Q |
122 |
atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt |
190 |
Q |
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| T |
4877633 |
atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt |
4877702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 4877690 - 4877798
Alignment:
| Q |
227 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt |
326 |
Q |
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| T |
4877690 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt |
4877789 |
T |
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| Q |
327 |
atgcctatg |
335 |
Q |
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| T |
4877790 |
atgcctatg |
4877798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
| Q |
164 |
ctagaggtctattagattacatgctttttggtttgctaattaaagaactat |
214 |
Q |
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| T |
670484 |
ctagaggtctattagattacatgctttccagttttctaattaaagaactat |
670434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 2288395 - 2288345
Alignment:
| Q |
282 |
atacctatgtttcttcttttatgctttttgattaagcttttgattatgcctat |
334 |
Q |
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| T |
2288395 |
atacctatgtttcttgatttatgctttttgattaagc--ttgattatgcctat |
2288345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
| Q |
175 |
ttagattacatgctttttg-gtttgctaattaaagaactatgctttt |
220 |
Q |
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| T |
28326870 |
ttagattacatgcttttttagtttgctaattaaaggactatgctttt |
28326916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
| Q |
14 |
aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca |
64 |
Q |
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| T |
47569542 |
aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca |
47569592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
| Q |
142 |
ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt |
220 |
Q |
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| T |
47923090 |
ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt |
47923009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
| Q |
184 |
atgctttttggtttgctaattaaagaactatgctttt |
220 |
Q |
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| T |
9066862 |
atgctttttggtttgctaattgaaggactatgctttt |
9066898 |
T |
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