View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_18 (Length: 334)
Name: NF6373_low_18
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 13982955 - 13982638
Alignment:
| Q |
9 |
acatcatcaaaacatgtgctattgttttcactacataaaagattagattcagcactgtcaaagctttcagccattgaaagagaggttgattaaaagggtg |
108 |
Q |
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| T |
13982955 |
acatcatcaaaacatgtgctattgttttcactacataaaagattagattcagcactgtcaaagctttcagccattgaaagagaggttgattaaaagggtg |
13982856 |
T |
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| Q |
109 |
ctaataatgaaacttcatgaaaaggggttattgnnnnnnnnnnnnnnnnnnnnnctttattgatgtggttagatgaaaaaattgaaatggcactggttga |
208 |
Q |
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| T |
13982855 |
ctaataatgaaacttcatgaaaaggggttattgaaaaaagcttaaaaaacaaaactttattgatgtgattagatgaaaaaattgaaatggcactggttga |
13982756 |
T |
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| Q |
209 |
acatggaaagagagtgtgagagtgatgaaagatgaagaggtttatgtaggaaatgggtttgtgtgttttagggtaaaaagaatagagagagatttatggg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13982755 |
acatggaaagagagtgtgagagtgatgaaagatgaagaggtttatgtaggaaatgggtttgtgtgttttagggtaaaaagaatagagagagatttatggg |
13982656 |
T |
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| Q |
309 |
gcaaaaatgatgatgatg |
326 |
Q |
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|||||||||||||||||| |
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| T |
13982655 |
gcaaaaatgatgatgatg |
13982638 |
T |
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