View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6373_low_19 (Length: 318)
Name: NF6373_low_19
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 34218046 - 34217758
Alignment:
| Q |
20 |
ggtctgataggttaaaagtactgtcaatcaacacaccaaaatctgtagcagttcagaaatacaaaaagttaaggcatctgaaggactacacaatgaaagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34218046 |
ggtctgataggttaaaagtactgtcaatcaacacaccaaaatctgtagcagttcagaaatacaaaaagttaaggcatctgaaggactacacaatgaaagt |
34217947 |
T |
|
| Q |
120 |
ccagaacaaggattaatttattacatgcatccccaaactgtctgcaatgaaaaactatgtgcagcttaggaatgcatataaagagtgacatcccttacta |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34217946 |
cgagaacaaggattaatttattacatgcatccccaaactgtctgcaatgaaaaactatgtgcagcttaggaatgcatataaagagtgacatcccttacaa |
34217847 |
T |
|
| Q |
220 |
gctgaattagagtctatcgatcaatgttgtcgacaacatatggaggaatgccaaaagttcgccatataaacacactattgcagcctatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34217846 |
gctgaattagagtctatcgatcaatgttgtcgacaacatatggaggaatgccaaaagttcgccatataaacacactattgcagcctatg |
34217758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University