View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_22 (Length: 298)
Name: NF6373_low_22
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 38642831 - 38643094
Alignment:
| Q |
23 |
cacagacgaagagaaagaacgaaacccatcaaacccaattagcatctacatcatccaacaaca--------gaagaaattctgaaaagggtatctgaaaa |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
38642831 |
cacaaacgaagagaaagaacgaaacccatcaaacccaattagcatctacatcatccaacaacacaaaatcagaagaaattctcaaaagggtatctgaaaa |
38642930 |
T |
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| Q |
115 |
aactaacttcttttgtagtaagtaactcagcagaaactgattcagaaacacgaactcgatcaaaattcgaatctacatcaccgatctcgtgattattgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38642931 |
aactaacttcttttgtagtaagtaactcagcagaaactgattcagaaacacgaactcgatcaaaattcgaatctacatcaccgatctcgtgattattgct |
38643030 |
T |
|
| Q |
215 |
tcctttattcggaaaatacttcacatccacgctttgttgacacacaacaacctctgcttcagcc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643031 |
tcctttattcggaaaatacttcacatccacgctttgttgacacacaacaacctctgcttcagcc |
38643094 |
T |
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