View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_24 (Length: 291)
Name: NF6373_low_24
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 1383959 - 1383685
Alignment:
| Q |
7 |
atcatcacaaggatctctcaattttgtagtataagtgaataataaagagtaacatgtcatatggaaataagctgaaaatattttatgagcataaattgtt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383959 |
atcataacaaggatctctcaattttgtagtataagtgaataataaagagtaacatgtcatatggaaataagctgaaaatattttatgagcataaattgtt |
1383860 |
T |
|
| Q |
107 |
ttcataagctctctcaagtagtctcataagttcaatgtcattagataaactaaaataactcaatccaaacaagttaagaagttgatacaaagcaaggtat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383859 |
ttcataagctctctcaagtagtctcataagttcaatgtcattagataaactaaaataactcaatccaaacaagttaagaagttgatacaaagcaaggtat |
1383760 |
T |
|
| Q |
207 |
attgttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383759 |
attgttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
1383685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 1390064 - 1389790
Alignment:
| Q |
7 |
atcatcacaaggatctctcaattttgtagtataagtgaataataaagagtaacatgtcatatggaaataagctgaaaatattttatgagcataaattgtt |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390064 |
atcataacaaggatctctcaattttgtagtataagtgaataataaagagtaacatgtcatatggaaataagctgaaaatattttatgagcataaattgtt |
1389965 |
T |
|
| Q |
107 |
ttcataagctctctcaagtagtctcataagttcaatgtcattagataaactaaaataactcaatccaaacaagttaagaagttgatacaaagcaaggtat |
206 |
Q |
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| T |
1389964 |
ttcataagctctctcaagtagtctcataagttcaatgtcattagataaactaaaataactcaatccaaacaagttaagaagttgatacaaagcaaggtat |
1389865 |
T |
|
| Q |
207 |
attgttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389864 |
attgttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
1389790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 1393791 - 1393722
Alignment:
| Q |
212 |
tttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
1393791 |
tttctcacctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttgacctttg |
1393722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 1350181 - 1350111
Alignment:
| Q |
211 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
1350181 |
ttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttg |
1350111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 1373479 - 1373409
Alignment:
| Q |
211 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1373479 |
ttttctcacctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttgacctttg |
1373409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 1358136 - 1358066
Alignment:
| Q |
211 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgttaacctttg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |
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| T |
1358136 |
ttttctcacctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttgacctttg |
1358066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 30496781 - 30496809
Alignment:
| Q |
103 |
tgttttcataagctctctcaagtagtctc |
131 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
30496781 |
tgttttcataagctctctcaagtagtctc |
30496809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 7006402 - 7006347
Alignment:
| Q |
218 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
273 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||| |
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|
| T |
7006402 |
acctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgtt |
7006347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 7009483 - 7009428
Alignment:
| Q |
218 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
273 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||||| |||||||| ||||| |
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| T |
7009483 |
acctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgtt |
7009428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 33197248 - 33197179
Alignment:
| Q |
110 |
ataagctctctcaagtagtctcataagt-tcaatgtcattagataaactaaaataactcaatccaaacaa |
178 |
Q |
| |
|
|||| ||||||||| |||||||| |||| ||||||||| | |||||||| |||||| ||||||||||||| |
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|
| T |
33197248 |
ataacctctctcaaatagtctcacaagtatcaatgtcagttgataaactcaaataagtcaatccaaacaa |
33197179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 25699187 - 25699130
Alignment:
| Q |
108 |
tcataagctctctcaagtagtctcataagttc-aatgtcattagataaactaaaataa |
164 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||||| |||||||||| |||||| |
|
|
| T |
25699187 |
tcataagctctctcaagaagtctcataagtgcttatgtcaatagataaactcaaataa |
25699130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 40880949 - 40880867
Alignment:
| Q |
96 |
cataaattgttttcataagctctctcaagtagtctca--taagttcaatgtcattagataaactaaaataactcaatccaaaca |
177 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||| || |||| || ||| ||||||| || |||||| |||||||||||| |
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| T |
40880949 |
cataagttgttttcataagctctctcaaacagtctcacgtatgttc-atttcaatagataagcttaaataagtcaatccaaaca |
40880867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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