View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_low_26 (Length: 280)

Name: NF6373_low_26
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_low_26
NF6373_low_26
[»] chr4 (2 HSPs)
chr4 (137-212)||(53757667-53757742)
chr4 (11-61)||(53757546-53757596)
[»] chr3 (2 HSPs)
chr3 (148-244)||(29821610-29821706)
chr3 (24-75)||(29821499-29821550)
[»] chr6 (3 HSPs)
chr6 (148-244)||(4030455-4030550)
chr6 (15-77)||(28928530-28928592)
chr6 (18-75)||(4030325-4030382)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 53757667 - 53757742
Alignment:
Q  137 catggccatccatatccgcaaaaagacacacctcaatctgccatcccctcacatattttctctttaaaattcaatc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53757667 catggccatccatatccgcaaaaagacacacctcaatctgccattccctcacatattttctctttaaaattcaatc 53757742  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 53757546 - 53757596
Alignment:
Q  11 caaaggttggatctaaaaagcacacactagtctacaacagactctcaacat 61  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||    
T  53757546 caaaggttggatctaaaaagcacacatcagtctacaacggactctcaacat 53757596  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 29821610 - 29821706
Alignment:
Q  148 atatccgcaaaaagacacacctcaatctgccatcccctcacatattttctctttaaaattcaatctgcatcattatcttactatttctgcgttttta 244  Q
    ||||| ||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||    
T  29821610 atatctgcaaaaagacacaccccaatctgctattccctcacatattttctctttaacattcaacatgcatcattatcttactatttctgggttttta 29821706  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 29821499 - 29821550
Alignment:
Q  24 taaaaagcacacactagtctacaacagactctcaacatttgataatttctat 75  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  29821499 taaaaagcacacactagtctacaatggactcgcaacatttgataatttctat 29821550  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 4030455 - 4030550
Alignment:
Q  148 atatccgcaaaaagacacacctcaatctgccatcccctcacatattttctctttaaaattcaatctgcatcattatcttactatttctgcgttttta 244  Q
    ||||| ||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||  ||||||||||||||||||||| || |||||||    
T  4030455 atatctgcaaaaagacacacc-caatctgctattccctcacatattttctctttaacattcaacatgcatcattatcttactatttttgggttttta 4030550  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 28928530 - 28928592
Alignment:
Q  15 ggttggatctaaaaagcacacactagtctacaacagactctcaacatttgataatttctatta 77  Q
    |||||||||||||||||||||||||||||||||   | ||||||||||| |||||||||||||    
T  28928530 ggttggatctaaaaagcacacactagtctacaatgaaatctcaacattttataatttctatta 28928592  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 4030325 - 4030382
Alignment:
Q  18 tggatctaaaaagcacacactagtctacaacagactctcaacatttgataatttctat 75  Q
    ||||| ||||||||||||||||||||||||  ||||  ||||||||||||||||||||    
T  4030325 tggatttaaaaagcacacactagtctacaatggacttgcaacatttgataatttctat 4030382  T

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