View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6373_low_27 (Length: 277)
Name: NF6373_low_27
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 10082349 - 10082094
Alignment:
| Q |
15 |
tcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082349 |
tcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtga |
10082250 |
T |
|
| Q |
115 |
gacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctgatgaattgct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082249 |
gacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttgctcaaccaagggctagaccttctgctgatgaattgct |
10082150 |
T |
|
| Q |
215 |
aaaagatccnnnnnnngatgtgttagattttgatgaaaatggtgatgttgatgatg |
270 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10082149 |
aaaagatcctttttttgatgtgttagattgtgatgaaaatggtgatgttgatgatg |
10082094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 22270441 - 22270649
Alignment:
| Q |
15 |
tcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtga |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
22270441 |
tcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtga |
22270540 |
T |
|
| Q |
115 |
gacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctgatgaattgct |
214 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22270541 |
gaccacaatccttgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgctgaggaattgct |
22270640 |
T |
|
| Q |
215 |
aaaagatcc |
223 |
Q |
| |
|
||| ||||| |
|
|
| T |
22270641 |
aaaggatcc |
22270649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 45873828 - 45873620
Alignment:
| Q |
15 |
tcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtga |
114 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
45873828 |
tcatttggaatgttagtactggagatggtgacacgagagattccttatagtgaatgtgacaatgttgcaaagatatacaagaaggtgtcatcaggagtga |
45873729 |
T |
|
| Q |
115 |
gacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctgatgaattgct |
214 |
Q |
| |
|
|||| ||||| |||||||||||||| || || |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
45873728 |
gaccacaatccttgaacaagataaaagacgcagaagtgaaggctttcattgaaaagtgtcttgcaaaaccaagggacagaccttctgctgaggaattgct |
45873629 |
T |
|
| Q |
215 |
aaaagatcc |
223 |
Q |
| |
|
||| ||||| |
|
|
| T |
45873628 |
aaaggatcc |
45873620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 22263399 - 22263191
Alignment:
| Q |
15 |
tcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtga |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
22263399 |
tcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtga |
22263300 |
T |
|
| Q |
115 |
gacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctgatgaattgct |
214 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||| |||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
22263299 |
gaccacaatccttgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaacaagggctagaccttctgctgaggaattgct |
22263200 |
T |
|
| Q |
215 |
aaaagatcc |
223 |
Q |
| |
|
||| ||||| |
|
|
| T |
22263199 |
aaaggatcc |
22263191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 22265139 - 22265308
Alignment:
| Q |
54 |
attccgtatagcgaatgtgataatgttgcgaagatatacaaaaaggtgtcttcaggcgtgagacctcaatcgttgaacaagataaaggatgctgaagtga |
153 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||||||| |||||||| ||||| |||||||||||||| ||||||||||| | |
|
|
| T |
22265139 |
attccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaagatgctgaagtca |
22265238 |
T |
|
| Q |
154 |
aggctttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctgatgaattgctaaaagatcc |
223 |
Q |
| |
|
|| ||||||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
22265239 |
agactttcatcgaaaagtgtcttgctcaatcaagggctagaccttctgctgaggaattgctaaaggatcc |
22265308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 41244667 - 41244622
Alignment:
| Q |
159 |
ttcattgaaaggtgtcttggtcaaccaagggctagaccttctgctg |
204 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41244667 |
ttcattgagaggtgtcttgctcagccaagggctagaccttctgctg |
41244622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University