View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_29 (Length: 269)
Name: NF6373_low_29
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 5994018 - 5993766
Alignment:
| Q |
6 |
acctatattagcaattgtctaattttattatgatcaaaacatccagatcttaaggatgactggtagcgtcataccataannnnnnnccatgccaagctca |
105 |
Q |
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| T |
5994018 |
acctatattagcaattgtctaattttattatgatcaaaacatcaagatcttaaggatgactggtagc---atatcataatatttttc-atgccaagctca |
5993923 |
T |
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| Q |
106 |
tctaaatacaagaagactattgaaaatataaaaatagcaccgcgaaagtccttcaccggatttaaactatggttcgctttagacctacaaatattttgga |
205 |
Q |
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| T |
5993922 |
tctaaatacaagaagactagtgaaaatataaaaatagcaccgcaaaagtccttcaccggatttaaactatggttcgctttaggcctacaaatatgttgga |
5993823 |
T |
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| Q |
206 |
tcggccctacttctcagttgaagaatacaaagatataacctcattgattctgtgctg |
262 |
Q |
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| T |
5993822 |
tcggccctacttctcggttgaagaatacaaagatataacctcattgattctttgctg |
5993766 |
T |
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