View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_30 (Length: 266)
Name: NF6373_low_30
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9535074 - 9535320
Alignment:
| Q |
1 |
tccaatgctattccttatgcttataaaagatatgaatgcaacataaaggagcatgcgtccaaatatcagaaatgatatttgacacagaaatttgacaaca |
100 |
Q |
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| T |
9535074 |
tccattgctaatcctttttcttataaaagatatgaatgcaacataaaggagcatgcgtccaaatatcagaaatgatatttgacacagaaatttgacaaca |
9535173 |
T |
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| Q |
101 |
atttagaagattaacgccagaaccataacctgtttctatctcattatctgtgcaggagcagatgatgtaaagatgattatggccaaaacattagccgaaa |
200 |
Q |
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| T |
9535174 |
atttagaagattaacgccagaaccataacctgtttctatctcattatctgtgcaggagcagatgatgtaaagatgattatggccaaaacattagccgaaa |
9535273 |
T |
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| Q |
201 |
tggaattaactgaccacaataaggagtccttatttgatggtggtgta |
247 |
Q |
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| T |
9535274 |
tggaattaactgaccacaataaggagtccttatttgttggtggtgta |
9535320 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 48922168 - 48922082
Alignment:
| Q |
151 |
tgcaggagcagatgatgtaaagatgattatggccaaaacattagccgaaatggaattaactgaccacaataaggagtccttatttga |
237 |
Q |
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| T |
48922168 |
tgcaggaccagatgatgtgaagatgattatggtcaaaatgttagcagaaatggagtcaacagaccgcaataaggagatcttatttga |
48922082 |
T |
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