View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_low_33 (Length: 255)

Name: NF6373_low_33
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_low_33
NF6373_low_33
[»] chr8 (13 HSPs)
chr8 (17-79)||(30935992-30936054)
chr8 (20-79)||(2743924-2743983)
chr8 (20-79)||(13468836-13468895)
chr8 (17-79)||(4125115-4125177)
chr8 (19-79)||(19715817-19715877)
chr8 (19-67)||(39086808-39086856)
chr8 (28-79)||(15682928-15682979)
chr8 (19-78)||(12958177-12958236)
chr8 (20-79)||(44705663-44705722)
chr8 (19-73)||(35206990-35207044)
chr8 (19-79)||(36994591-36994651)
chr8 (20-79)||(30056092-30056151)
chr8 (21-78)||(27121842-27121899)
[»] chr7 (14 HSPs)
chr7 (19-79)||(13254192-13254252)
chr7 (17-79)||(29059793-29059855)
chr7 (19-79)||(8839372-8839432)
chr7 (23-79)||(31492097-31492153)
chr7 (20-78)||(21747132-21747189)
chr7 (19-79)||(28537380-28537440)
chr7 (20-79)||(19477340-19477399)
chr7 (19-78)||(40099364-40099423)
chr7 (19-79)||(2657927-2657987)
chr7 (20-73)||(42741909-42741962)
chr7 (20-79)||(27484140-27484199)
chr7 (20-79)||(32469921-32469980)
chr7 (19-57)||(5905812-5905850)
chr7 (19-77)||(46373663-46373721)
[»] chr6 (9 HSPs)
chr6 (19-79)||(12411138-12411198)
chr6 (20-78)||(31107585-31107643)
chr6 (24-79)||(21029074-21029129)
chr6 (34-73)||(5944847-5944886)
chr6 (20-79)||(21910196-21910255)
chr6 (19-73)||(15614670-15614724)
chr6 (20-78)||(278383-278441)
chr6 (37-79)||(28099251-28099293)
chr6 (19-79)||(423645-423705)
[»] chr4 (13 HSPs)
chr4 (17-79)||(31307157-31307219)
chr4 (19-76)||(10199198-10199255)
chr4 (19-79)||(14854595-14854655)
chr4 (19-79)||(35972333-35972393)
chr4 (19-79)||(38766079-38766139)
chr4 (19-78)||(38844260-38844319)
chr4 (20-79)||(45994513-45994572)
chr4 (23-78)||(32005243-32005298)
chr4 (19-76)||(13686591-13686648)
chr4 (17-76)||(22189482-22189541)
chr4 (19-47)||(25768775-25768803)
chr4 (20-60)||(35334208-35334248)
chr4 (19-79)||(51853688-51853747)
[»] chr5 (7 HSPs)
chr5 (17-79)||(10591915-10591977)
chr5 (19-79)||(28023534-28023594)
chr5 (20-78)||(30785078-30785136)
chr5 (18-62)||(10676517-10676561)
chr5 (19-79)||(22188087-22188147)
chr5 (24-79)||(12682630-12682685)
chr5 (20-76)||(2798409-2798464)
[»] chr2 (20 HSPs)
chr2 (17-79)||(37568818-37568880)
chr2 (17-79)||(44732664-44732726)
chr2 (19-79)||(5394387-5394447)
chr2 (19-79)||(28365939-28365999)
chr2 (19-79)||(18105453-18105513)
chr2 (19-79)||(42745207-42745267)
chr2 (17-79)||(31579320-31579382)
chr2 (19-79)||(12133321-12133381)
chr2 (19-79)||(17627549-17627609)
chr2 (19-65)||(17981488-17981534)
chr2 (17-79)||(33756965-33757027)
chr2 (19-76)||(3772637-3772694)
chr2 (20-73)||(7020455-7020508)
chr2 (19-76)||(17672621-17672678)
chr2 (19-79)||(7157488-7157548)
chr2 (19-67)||(40688833-40688881)
chr2 (19-73)||(993744-993798)
chr2 (20-72)||(19252590-19252642)
chr2 (39-79)||(32643073-32643113)
chr2 (17-73)||(45414013-45414069)
[»] chr3 (13 HSPs)
chr3 (19-75)||(30996060-30996116)
chr3 (19-76)||(38331118-38331175)
chr3 (19-79)||(48204402-48204462)
chr3 (19-74)||(25224689-25224744)
chr3 (19-73)||(46604657-46604711)
chr3 (19-79)||(27763713-27763771)
chr3 (19-78)||(38088625-38088684)
chr3 (20-79)||(40294603-40294662)
chr3 (39-79)||(22288245-22288285)
chr3 (19-73)||(28967279-28967333)
chr3 (19-76)||(42514594-42514651)
chr3 (19-79)||(14352544-14352604)
chr3 (31-79)||(48211051-48211099)
[»] chr1 (8 HSPs)
chr1 (19-73)||(45806226-45806280)
chr1 (20-78)||(29124736-29124794)
chr1 (19-64)||(14500364-14500409)
chr1 (19-78)||(16756072-16756131)
chr1 (20-79)||(22022111-22022170)
chr1 (20-79)||(17600589-17600648)
chr1 (19-76)||(35692475-35692532)
chr1 (24-77)||(52912616-52912669)
[»] scaffold0182 (1 HSPs)
scaffold0182 (30-79)||(26332-26381)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-76)||(32358-32414)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-61)||(167845-167887)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30935992 - 30936054
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30935992 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 30936054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 2743924 - 2743983
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  2743924 ttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 2743983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 13468895 - 13468836
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  13468895 ttagattagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 13468836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 4125177 - 4125115
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||    
T  4125177 cacttagatgagatggaacgggtctcttctagcttaaccaatgtcctgggttcgaatcaagcc 4125115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 19715877 - 19715817
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||  |||| ||||| |||||||||||||||| ||||||||||||||    
T  19715877 cttagatgagatggaacatgtcttttctagcttaaccaaggtcctgggttcgaatccagcc 19715817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39086808 - 39086856
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagt 67  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39086808 cttagatgagatggaacgggcctcttctagcttaaccaaggtcctgagt 39086856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 15682928 - 15682979
Alignment:
Q  28 gatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  15682928 gatggaacgagtctcttctagcttaatcaaggtcctgagttcgaatccagcc 15682979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 12958236 - 12958177
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    |||||||||||||||||  |||||||||| ||||||||||||| || ||| |||||||||    
T  12958236 cttagatgagatggaactagtctcttctagcttaaccaaggtcatgggtttgaatccagc 12958177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 44705663 - 44705722
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||| |||||||| |||||||||||  |||||||||||| || ||||||||||||||    
T  44705663 ttagatgggatggaacaggtctcttctagtttaaccaaggtcttgggttcgaatccagcc 44705722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 35206990 - 35207044
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    ||||||||||||| ||| |||||||||||||||||||||| | ||| ||||||||    
T  35206990 cttagatgagatgaaacaggtctcttctaacttaaccaagattctgggttcgaat 35207044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36994651 - 36994591
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||| |||||| ||  ||||||||||  ||||||||||||||| ||||||||||||||    
T  36994651 cttagataagatggcacatgtctcttctagtttaaccaaggtcctgggttcgaatccagcc 36994591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 30056151 - 30056092
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||  |||||||||| |||||| |||||| || |||| |||||||||    
T  30056151 ttagatgagatggaacatgtctcttctagcttaacgaaggtcatgggttcaaatccagcc 30056092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 27121899 - 27121842
Alignment:
Q  21 tagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||   |||||||||||||| ||||||||| || ||| |||||||||||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagc 27121842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 13254252 - 13254192
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13254252 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagcc 13254192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 29059793 - 29059855
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  29059793 cacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 29059855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8839432 - 8839372
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  8839432 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 8839372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 31492097 - 31492153
Alignment:
Q  23 gatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  31492097 gatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 31492153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 21747189 - 21747132
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  21747189 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctg-ggtcgaatccagc 21747132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28537380 - 28537440
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||||||    
T  28537380 cttagatgagatggaacgggtctcttctaacttaatcaaggttttgggttcgaatccagcc 28537440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 19477399 - 19477340
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||    
T  19477399 ttagatgagatggaacgggtctcttctagcttaaccaaggttctgggtttgaatccagcc 19477340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 40099423 - 40099364
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||    
T  40099423 cttagatgagatggaacgggtctcttctagcttaactaagatcctgaattcgaatccagc 40099364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 2657987 - 2657927
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| |||||    
T  2657987 cttagatgagatggaacgagtctcttctaacttaatcaaggccctgagttcaaatacagcc 2657927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 42741962 - 42741909
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||  ||||||||    
T  42741962 ttagatgagatggaacaggtctcttctatcttaaccaatgtcctaggttcgaat 42741909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 27484199 - 27484140
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||  ||  |||||||||| ||||||||||||||||||||  |||||||||    
T  27484199 ttagatgagatgacacaagtctcttctagcttaaccaaggtcctgagtttaaatccagcc 27484140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 32469921 - 32469980
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||| |||||||||| ||||| |||| |  |||||||||||| ||||    
T  32469921 ttagatgagatggaacgagtctcttctagcttaatcaagattttgagttcgaatcaagcc 32469980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 5905812 - 5905850
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaa 57  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  5905812 cttagatgagatagaacgagtctcttctaacttaaccaa 5905850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 46373663 - 46373721
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccag 77  Q
    |||||||||||||   ||||||||||||| ||||| |||| ||||| ||||||||||||    
T  46373663 cttagatgagatgacgcgggtctcttctagcttaagcaagatcctgggttcgaatccag 46373721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 12411138 - 12411198
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12411138 cttagatgagatggaacaggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 12411198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 31107643 - 31107585
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    |||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||    
T  31107643 ttagatgagatgaaatgggtctcttctaacttaactaaggttctgagttcgaatccagc 31107585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 21029129 - 21029074
Alignment:
Q  24 atgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||    
T  21029129 atgagatggcacgggtctcttctagcttaaccaaggtcttgggttcgaatccagcc 21029074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 5944847 - 5944886
Alignment:
Q  34 acgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  5944847 acgggtctcttttaacttaaccaaggtcctgagttcgaat 5944886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 21910196 - 21910255
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||| |||  |||||||||| |||||||||| ||||| ||||||||||||||    
T  21910196 ttagatgagatgaaacaagtctcttctagcttaaccaagatcctgggttcgaatccagcc 21910255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 15614724 - 15614670
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||| ||||||||||||| |||||||||||||||||||| ||| || ||||||||    
T  15614724 cttatatgagatggaacgagtctcttctaacttaaccaatgtcatgggttcgaat 15614670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 278383 - 278441
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||  ||| |||||||||| |||||| |||||| |||||| |||||||||    
T  278383 ttagatgagatgacacgagtctcttctagcttaactaaggtcttgagtttgaatccagc 278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 28099251 - 28099293
Alignment:
Q  37 ggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||    
T  28099251 ggtctcttctaccttaactaaggtcctgggttcgaatccagcc 28099293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 423645 - 423705
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||| | |||||||||  |||||||||||  || ||| ||||||||||    
T  423645 cttagatgagatggaacagatctcttctagtttaaccaaggttttgggtttgaatccagcc 423705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 31307219 - 31307157
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  31307219 cacttagatgagatggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 31307157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10199255 - 10199198
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||    
T  10199255 cttagatgagatggaacgggtctcttataacttaaccaaggtcttgtgttcgaatcca 10199198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 14854595 - 14854655
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||||    
T  14854595 cttagatgagatggaacggttctcttctagcttaaccaaggttctgggttcgaatccagcc 14854655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 35972333 - 35972393
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||    
T  35972333 cttagatgagatggaacgggcctcttctagcttaaccaaggtcttgggttcgaatccagcc 35972393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38766079 - 38766139
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||    
T  38766079 cttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggtttgaatccagcc 38766139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 38844319 - 38844260
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    |||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  38844319 cttaaatgagatggaacgagtctcttctagcttaaccaaggtcatgagttcgaatccagc 38844260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 45994513 - 45994572
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||    
T  45994513 ttagatgagatggaacaggtctcttctagcttaaccaaggtcctggattcgaatccagcc 45994572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 32005298 - 32005243
Alignment:
Q  23 gatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  32005298 gatgagatggaataggtctcttctaacttaaccaaagtcctgagttcgaattcagc 32005243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 13686591 - 13686648
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||||| | |||||||||||  |||||||||||||||| |||||||||||    
T  13686591 cttagatgagatggcatgggtctcttcttgcttaaccaaggtcctgggttcgaatcca 13686648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 22189541 - 22189482
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||||||  | | |||||||||| |||||||||||||| |||||||||||||    
T  22189541 cacttagatgagatgacatgagtctcttctagcttaaccaaggtccagagttcgaatcca 22189482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 25768803 - 25768775
Alignment:
Q  19 cttagatgagatggaacgggtctcttcta 47  Q
    |||||||||||||||||||||||||||||    
T  25768803 cttagatgagatggaacgggtctcttcta 25768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 35334248 - 35334208
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggt 60  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  35334248 ttagatgagatggaacaagtctcttctagcttaaccaaggt 35334208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 51853688 - 51853747
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||| ||| | |||||||||||||||||||| || ||| |||||||| |||||    
T  51853688 cttagatgagatagaatgagtctcttctaacttaaccaaagttctg-gttcgaattcagcc 51853747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 10591915 - 10591977
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  10591915 cacttagatgagatggaacgggtctcttctagattaaccaaggtcctgggttcgaatccagcc 10591977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28023594 - 28023534
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  28023594 cttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagcc 28023534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 30785136 - 30785078
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||||||| |||||||||| ||||| ||| ||| || |||||||||||||    
T  30785136 ttagatgagatggaacgagtctcttctagcttaatcaatgtcttgggttcgaatccagc 30785078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10676517 - 10676561
Alignment:
Q  18 acttagatgagatggaacgggtctcttctaacttaaccaaggtcc 62  Q
    |||||||||||||||||||||| |||||||| | |||||||||||    
T  10676517 acttagatgagatggaacgggtttcttctaattaaaccaaggtcc 10676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 22188147 - 22188087
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||| |||||  ||||||||||||||||||||||  || ||| ||||||||||    
T  22188147 cttagatgagattgaacgaatctcttctaacttaaccaaggtattgggtttgaatccagcc 22188087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 12682630 - 12682685
Alignment:
Q  24 atgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||| |||| |||||||||| ||||| ||| || ||||||||||||||||||    
T  12682630 atgagatgaaacgagtctcttctagcttaagcaatgttctgagttcgaatccagcc 12682685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 2798464 - 2798409
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||| ||||| | ||||||| |||||||||||| ||| |||||||||||    
T  2798464 ttagatgagatgaaacggtt-tcttctagcttaaccaaggttctgggttcgaatcca 2798409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 37568880 - 37568818
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  37568880 cacttagatgagatggaacgggtttcttctagcttaaccaaggtcctgggttcgaatccagcc 37568818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 44732726 - 44732664
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  44732726 cacttagatgagatggaacgggtctcttatagcttaaccaaggtcctgggttcgaatccagcc 44732664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 5394387 - 5394447
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  5394387 cttagatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagcc 5394447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28365939 - 28365999
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  28365939 cttagatgagatggaacgcgtctcttctaacttaaccaaggtcgtgagttcgaatgcagcc 28365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18105513 - 18105453
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  18105513 cttatatgagatggaacgagtctcttctagcttaaccaaggtcctgggttcgaatccagcc 18105453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 42745267 - 42745207
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||    
T  42745267 cttagatgagatggaacgggtctcttatagcttaaccaaggtcttgggttcgaatccagcc 42745207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 31579382 - 31579320
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  31579382 cacttagatgagatgtaacgggtctcttctagcttaatcaaggtcttgggttcgaatccagcc 31579320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 12133381 - 12133321
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||| ||||| ||||||| || ||||||||||||||    
T  12133381 cttagatgagatggaacgagtctcttctagcttaatcaaggtcatgggttcgaatccagcc 12133321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 17627549 - 17627609
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||| ||||||  ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  17627549 cttagacgagatgacacgcgtctcttctaatttaaccaaggtcctgagttcgaatccagcc 17627609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 17981488 - 17981534
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctga 65  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||||    
T  17981488 cttagatgagatggaacgagtctcttctagcttaaccaaagtcctga 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 33756965 - 33757027
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||  |||||||||||||| ||||| |||||| || ||||||||| |||||    
T  33756965 cacttagatgagatgacacgggtctcttctagcttaatcaaggttcttagttcgaattcagcc 33757027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 3772694 - 3772637
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||||  ||  ||||||||||| |||||||||||||| ||||||||||||    
T  3772694 cttagatgagatgacacaagtctcttctaatttaaccaaggtcctaagttcgaatcca 3772637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 7020508 - 7020455
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    ||||||||||| | |||||||||||||| ||||||||||||| ||| |||||||    
T  7020508 ttagatgagattgcacgggtctcttctagcttaaccaaggtcttgaattcgaat 7020455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 17672621 - 17672678
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||| ||||||  ||| |||||||| || |||||||||||||||||||||||||||    
T  17672621 cttagacgagatgacacgcgtctcttcaaatttaaccaaggtcctgagttcgaatcca 17672678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 7157488 - 7157548
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||| ||| ||||| ||||||||||||||||||||| ||||  ||||||||| ||||    
T  7157488 cttagatgggatagaacgagtctcttctaacttaaccaagatcctaggttcgaatctagcc 7157548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40688881 - 40688833
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagt 67  Q
    ||||| ||||||||||  ||||||||||||||||||||| |||||||||    
T  40688881 cttaggtgagatggaattggtctcttctaacttaaccaaagtcctgagt 40688833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 993744 - 993798
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||||||||||||  ||| ||||||| || |||||||||||||||| ||||||||    
T  993744 cttagatgagatgacacgtgtctcttatagcttaaccaaggtcctgggttcgaat 993798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 19252642 - 19252590
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaa 72  Q
    ||||||||||||  ||||||||||| || |||||||||  |||||||||||||    
T  19252642 ttagatgagatgatacgggtctcttttagcttaaccaaactcctgagttcgaa 19252590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 32643113 - 32643073
Alignment:
Q  39 tctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||| |||| |||||| |||||||||||||    
T  32643113 tctcttctaacttaaacaagatcctgaattcgaatccagcc 32643073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 45414069 - 45414013
Alignment:
Q  17 cacttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    ||||||||||||||| |||| ||||||||||| ||||| || || |||| |||||||    
T  45414069 cacttagatgagatgaaacgagtctcttctaatttaacgaaagttctgaattcgaat 45414013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 30996116 - 30996060
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcc 75  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  30996116 cttagatgagatggaacgggtctcttctatcttaaccaaggtcctgggttcgaatcc 30996060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38331118 - 38331175
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  38331118 cttagatgagatggatcgggtctcttctaacttaaccaatgtcctgagtttgaatcca 38331175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 48204462 - 48204402
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||    
T  48204462 cttagatgagatggaacgagtctcttctagcttaaccaaggtcttgggttcgaatccagcc 48204402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 25224689 - 25224744
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatc 74  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  25224689 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatc 25224744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 46604711 - 46604657
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  46604711 cttagatgagatggaacgagtctcttataacttaaccaaggttctgggttcgaat 46604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27763713 - 27763771
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||| |||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  27763713 cttagatgagatagaacgggtctc--ctagcttaaccaaggtcctgggttcgaatccagcc 27763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 38088625 - 38088684
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||| ||||||||||||||| |||||||||||| |   |||||||||||||    
T  38088625 cttagatgagatgaaacgggtctcttctagcttaaccaaggttccaggttcgaatccagc 38088684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 40294603 - 40294662
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||  ||| ||||| |||| ||||| |||||||||||||||||||||||||    
T  40294603 ttagatgagatgacacgagtctcctctaccttaatcaaggtcctgagttcgaatccagcc 40294662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 22288245 - 22288285
Alignment:
Q  39 tctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  22288245 tctcttctaacttaaccaaagtcctgagttcgaattcagcc 22288285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 28967333 - 28967279
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||| ||||||||  ||| |||||||||||||||||||||||| || ||||||||    
T  28967333 cttacatgagatgacacgagtctcttctaacttaaccaaggtcatgtgttcgaat 28967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 42514594 - 42514651
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    ||||||||||||| |||| |||||||||| |||||| || ||| || |||||||||||    
T  42514594 cttagatgagatgaaacgtgtctcttctagcttaactaaagtcttgggttcgaatcca 42514651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 14352544 - 14352604
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||  |||||||||| |||||||||| |  |  ||||||||||||||    
T  14352544 cttagatgagatggaacaagtctcttctagcttaaccaagatattcggttcgaatccagcc 14352604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 48211099 - 48211051
Alignment:
Q  31 ggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||||||||    
T  48211099 ggaacgggtctcttctaacttaatcaaggtttttggttcgaatccagcc 48211051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 45806226 - 45806280
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaat 73  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  45806226 cttagatgagatagaacgggtctcttctatcttaaccaaggtcctgagttcgaat 45806280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 29124736 - 29124794
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    |||||||||||| |||| |||||||||| |||||||| |||| ||||||||||||||||    
T  29124736 ttagatgagatgaaacgagtctcttctagcttaaccagggtcatgagttcgaatccagc 29124794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 14500409 - 14500364
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctg 64  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  14500409 cttagatgcgatggaacgggtctcttctagcttaaccaaggtcctg 14500364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 16756072 - 16756131
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagc 78  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||    
T  16756072 cttagatgagatggaacggatctcttctagcttaaccaaggttctgggtttgaattcagc 16756131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 22022111 - 22022170
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||| ||||||||||| |||||| |||||  || ||||||||||||||    
T  22022111 ttagatgagatggaacaggtctcttctagcttaactaaggttgtgggttcgaatccagcc 22022170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 17600648 - 17600589
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    ||||||||||||  |||||||||||||| ||||||||||||| || ||| |||| |||||    
T  17600648 ttagatgagatgacacgggtctcttctagcttaaccaaggtcttgggttagaattcagcc 17600589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 35692475 - 35692532
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||||||||||| | |||||| |||||  |||||||| ||| ||||||||||||||    
T  35692475 cttagatgagatggcatgggtcttttctagtttaaccaatgtcttgagttcgaatcca 35692532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 52912616 - 52912669
Alignment:
Q  24 atgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccag 77  Q
    ||||||||||||||||||||  || |||||||||| || || ||||||||||||    
T  52912616 atgagatggaacgggtctctattagcttaaccaagatcttgggttcgaatccag 52912669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 26332 - 26381
Alignment:
Q  30 tggaacgggtctcttctaacttaaccaaggtcctgagttcgaatccagcc 79  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  26332 tggaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagcc 26381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 32414 - 32358
Alignment:
Q  20 ttagatgagatggaacgggtctcttctaacttaaccaaggtcctgagttcgaatcca 76  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||| |||||||||||    
T  32414 ttagataagatggaacgggtctcttctagcttcaccaaggttctgggttcgaatcca 32358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 167845 - 167887
Alignment:
Q  19 cttagatgagatggaacgggtctcttctaacttaaccaaggtc 61  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||    
T  167845 cttagatgagatgaaacgggtctcttctagcttaatcaaggtc 167887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University