View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_low_34 (Length: 250)

Name: NF6373_low_34
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_low_34
NF6373_low_34
[»] chr5 (2 HSPs)
chr5 (1-201)||(33602522-33602725)
chr5 (52-173)||(33575328-33575448)
[»] chr2 (20 HSPs)
chr2 (6-170)||(10474161-10474329)
chr2 (6-173)||(10518521-10518688)
chr2 (6-174)||(10507346-10507514)
chr2 (6-169)||(10545150-10545306)
chr2 (56-173)||(10463583-10463700)
chr2 (4-166)||(7478629-7478789)
chr2 (15-173)||(9079935-9080098)
chr2 (71-173)||(10848789-10848889)
chr2 (70-173)||(28105308-28105410)
chr2 (27-170)||(7476488-7476628)
chr2 (6-111)||(10507523-10507627)
chr2 (6-102)||(10488881-10488977)
chr2 (6-170)||(10492771-10492936)
chr2 (94-158)||(10860708-10860772)
chr2 (6-111)||(7482113-7482218)
chr2 (6-111)||(10492947-10493052)
chr2 (6-111)||(7478515-7478620)
chr2 (70-158)||(27967328-27967415)
chr2 (50-101)||(10488770-10488821)
chr2 (116-171)||(6915263-6915318)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 33602725 - 33602522
Alignment:
Q  1 tgatttagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtg 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33602725 tgatatagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtg 33602626  T
Q  101 tgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatg------ggcagtgctttcaaatacgtatatgggagtaagcgtta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |   ||||||||||    
T  33602625 tgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcatgggcagtgctttcaaatacgtataag---gtaagcgtta 33602529  T
Q  195 aattaat 201  Q
    |||||||    
T  33602528 aattaat 33602522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 33575328 - 33575448
Alignment:
Q  52 tctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattat 151  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||| ||| ||||||| ||||||||||||||    
T  33575328 tctacaaatcttatcttgtaaatagttttctttt-gttattattgtgtgtgtaggaagcagttcatagggccatcattgcacggaggtttataccattat 33575426  T
Q  152 tcatgggcagtgctttcaaata 173  Q
    |||||||||||||| |||||||    
T  33575427 tcatgggcagtgctctcaaata 33575448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 10474329 - 10474161
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgt----gt 101  Q
    |||| ||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||||    ||    
T  10474329 tagtgtgatatacgaaaaccagttgttacttcgcccccacctcccatctacagatcttatcttgtaaacagttttctttttgttattattgtgtgtgtgt 10474230  T
Q  102 gtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaa 170  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10474229 gtaggaagcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 10518688 - 10518521
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtag 105  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  10518688 tagtgtgatatatgaaaaccagttgttacttcgcccccaccccccattttcaaatcttattttgtaaattattttctttttgttattattgtgtgtgtag 10518589  T
Q  106 gaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaaata 173  Q
    ||||||||| || ||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||    
T  10518588 gaagcagttcgtcgggccaccatagcacggaaatttataccatttctcatgggcagtgcattcaaata 10518521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 10507514 - 10507346
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtag 105  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |||| | |||||||||  |||||| |  ||||||| |||||||||||||||||||||    
T  10507514 tagtatgatatataaaaaccagttgttacttctcccccaccccccattttcaaatcttaatttgtaagttattttcttgttgttattattgtgtgtgtag 10507415  T
Q  106 gaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaaatac 174  Q
    ||||||||| || || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  10507414 gaagcagttcgtcggaccaccatagcacggaaatttatacccgtattcatgggcagtgctttcaaatac 10507346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 10545306 - 10545150
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtag 105  Q
    |||| ||||||| ||||||||||||||||||| ||||||||| ||||||      |||||||||||||||||||| |||||||||||||||||| |||||    
T  10545306 tagtgtgatatacgaaaaccagttgttacttcacccccaccc-ccatct------cttatcttgtaaatagttttatttttgttattattgtgtttgtag 10545214  T
Q  106 gaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttca 169  Q
    ||||| ||| |  ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  10545213 gaagctgttcgccgggccaccatagcacggaaatttataccatttttcatgggcagtgctttca 10545150  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 10463700 - 10463583
Alignment:
Q  56 caaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcat 155  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||| ||||||||||| |||||    
T  10463700 caaatcttattttgtaaataattttctttttgttattattgtgtttgtaggaagcaattcgtagagccacgatagcacggaaatttataccatttttcat 10463601  T
Q  156 gggcagtgctttcaaata 173  Q
    ||| ||||||||||||||    
T  10463600 gggtagtgctttcaaata 10463583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 7478629 - 7478789
Alignment:
Q  4 tttagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgt 103  Q
    |||||| ||||||| ||||||  |||||||||| |||||||| | |||||| |||||||||| |||||| |||||||||||||||||||||  |||||||    
T  7478629 tttagtgtgatatacgaaaacatgttgttactttgcccccacaccccatcttcaaatcttattttgtaactagttttctttttgttattat--tgtgtgt 7478726  T
Q  104 aggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctt 166  Q
    |||||||||||  |||||| |||| |||||| || ||||||||  | ||||||||||||||||    
T  7478727 aggaagcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgctt 7478789  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 9079935 - 9080098
Alignment:
Q  15 atatgaaaaccagttgttacttcgcccccacccgcca--tctacaaatc-ttatcttgtaaatagttttctttttgttattatt--gtgtgtgtaggaag 109  Q
    |||||||||| |||||||||||| ||| ||||| ||   ||| |||| | |||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  9079935 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaag 9080034  T
Q  110 cagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaaata 173  Q
    ||||| ||||||||||||||||   ||||||||||||| |||||||||| ||||||| ||||||    
T  9080035 cagttcgtagggccaccatagcggagaagtttataccagtattcatgggaagtgcttacaaata 9080098  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 10848889 - 10848789
Alignment:
Q  71 aaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaa 170  Q
    ||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||  || ||||||||| ||||||||||   |||||||||    
T  10848889 aaataattttctttttgttattattgtgtgt--aggaagcagttcgtagggccaccatagcacacaaatttataccagtattcatgggtgatgctttcaa 10848792  T
Q  171 ata 173  Q
    |||    
T  10848791 ata 10848789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 28105308 - 28105410
Alignment:
Q  70 taaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttca 169  Q
    ||||||||||| || ||| ||||||| ||||||||| | |||||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||     
T  28105308 taaatagtttt-ttattgctattattttgtgtgtagaacgcagttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgctttcc 28105406  T
Q  170 aata 173  Q
    ||||    
T  28105407 aata 28105410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 7476488 - 7476628
Alignment:
Q  27 gttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccacc 126  Q
    |||||||||| ||||| |||| |||||| |||||||||| |||| | |||||||||||||||||||||  ||||||||||||||| ||  |||||| ||     
T  7476488 gttgttactttgccccaaccc-ccatcttcaaatcttattttgtcactagttttctttttgttattat--tgtgtgtaggaagcaattcatagggcaact 7476584  T
Q  127 atagcacggaagtttataccattattcatgggcagtgctttcaa 170  Q
    ||||||| ||| ||| ||||  | |||||||| ||||| |||||    
T  7476585 atagcacagaaatttgtaccggttttcatgggtagtgcattcaa 7476628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 10507627 - 10507523
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtag 105  Q
    |||| ||||||| ||||||||| || || ||| | || |||| ||||||| ||||||||| ||||| |||| |||||||||||||||||||| |||||||    
T  10507627 tagtgtgatatacgaaaaccagatgctatttcactccaaccc-ccatctataaatcttattttgtatataggtttctttttgttattattgtatgtgtag 10507529  T
Q  106 gaagca 111  Q
    ||||||    
T  10507528 gaagca 10507523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 10488977 - 10488881
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtg 102  Q
    |||| ||||||| |||||| |||||||||||| | |||||||  |||||| |||| |||| ||||| ||||||||| ||||||||||||||| ||||    
T  10488977 tagtgtgatatacgaaaacaagttgttacttcactcccacccctcatctataaattttattttgtatatagttttccttttgttattattgtatgtg 10488881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 10492936 - 10492771
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgcc-----atctacaaatcttatcttgtaaatagttttctttttgttattattgtgtg 100  Q
    |||| ||||||| |||||||||||||||||| |||||| ||| ||     |||| |||||||||| | |||| ||||||||||||||||||| |    ||    
T  10492936 tagtgtgatatacgaaaaccagttgttactttgcccccccccccccccccatcttcaaatcttatttggtaactagttttctttttgttattgt----tg 10492841  T
Q  101 tgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaa 170  Q
    ||||||||||| || ||||||| ||||||||||  || ||| ||||  | |||||||| ||||| |||||    
T  10492840 tgtaggaagcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgcattcaa 10492771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 10860772 - 10860708
Alignment:
Q  94 ttgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatggg 158  Q
    |||| |||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||    
T  10860772 ttgtctgtgtaggaagcagttcgtagggtcaccatagcacggaaatttataccagtattcatggg 10860708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 7482113 - 7482218
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatag-ttttctttttgttattattgtgtgtgta 104  Q
    |||| ||||||| ||||||| |||||||||| |  ||||||| ||||||| |||| |||| ||||| |||| |||||||||| ||| |||||||||||||    
T  7482113 tagtgtgatatacgaaaacctgttgttactttgatcccaccc-ccatctataaattttattttgtatataggttttctttttattactattgtgtgtgta 7482211  T
Q  105 ggaagca 111  Q
    |||||||    
T  7482212 ggaagca 7482218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 10493052 - 10492947
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatag-ttttctttttgttattattgtgtgtgta 104  Q
    |||| ||||||| ||||||| ||||||||||||| | ||| | ||||||| |||| |||| ||||| |||| |||||| ||| |||||||||||||||||    
T  10493052 tagtgtgatatacgaaaacctgttgttacttcgctctcactc-ccatctataaattttattttgtatataggttttctctttattattattgtgtgtgta 10492954  T
Q  105 ggaagca 111  Q
    |||||||    
T  10492953 ggaagca 10492947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 7478515 - 7478620
Alignment:
Q  6 tagtatgatatatgaaaaccagttgttacttcgcccccacccgccatctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgtgtag 105  Q
    |||| ||||||| |||||||||||||||| |||| | |||||  |||||| |||| |||| ||||| ||||||||| ||||  ||||||||| ||||| |    
T  7478515 tagtgtgatatacgaaaaccagttgttacatcgctcacacccctcatctataaattttattttgtacatagttttccttttcatattattgtatgtgttg 7478614  T
Q  106 gaagca 111  Q
    ||||||    
T  7478615 gaagca 7478620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 27967415 - 27967328
Alignment:
Q  70 taaatagttttctttttgttattattgtgtgtgtaggaagcagtttgtagggccaccatagcacggaagtttataccattattcatggg 158  Q
    ||||||||||| || ||| ||||||| ||||||||| | |||||| ||||||||||||||||||  ||||||||||||  |||||||||    
T  27967415 taaatagtttt-ttattgctattattttgtgtgtagaacgcagttcgtagggccaccatagcacacaagtttataccagcattcatggg 27967328  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 10488821 - 10488770
Alignment:
Q  50 catctacaaatcttatcttgtaaatagttttctttttgttattattgtgtgt 101  Q
    ||||| |||||||||| |||||| ||||||||||| ||||||||||||||||    
T  10488821 catcttcaaatcttattttgtaactagttttctttctgttattattgtgtgt 10488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 6915263 - 6915318
Alignment:
Q  116 gtagggccaccatagcacggaagtttataccattattcatgggcagtgctttcaaa 171  Q
    ||||||| |||||||||||||| ||||||||  |||||||||| |||||| |||||    
T  6915263 gtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 6915318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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