View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_35 (Length: 250)
Name: NF6373_low_35
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42204076 - 42203831
Alignment:
| Q |
1 |
tggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggctttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204076 |
tggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggctttta |
42203977 |
T |
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| Q |
101 |
cagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaacataactaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42203976 |
cagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaaagtaacataactaa |
42203877 |
T |
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| Q |
201 |
agagagttatagctgcattttctctagcctccatcctttgctactc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42203876 |
agagagttatagctgcattttctctagcctccatcctttgttactc |
42203831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42212944 - 42212699
Alignment:
| Q |
1 |
tggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggctttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212944 |
tggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggctttta |
42212845 |
T |
|
| Q |
101 |
cagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaacataactaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42212844 |
cagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgcctcttggagtaccttcacaaagtaacataactaa |
42212745 |
T |
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| Q |
201 |
agagagttatagctgcattttctctagcctccatcctttgctactc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42212744 |
agagagttatagctgcattttctctagcctccatcctttgttactc |
42212699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 42218894 - 42218703
Alignment:
| Q |
1 |
tggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggctttta |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42218894 |
tggcttgcaagg-ttatcattatagctaatgctttgtcaaccatcccacgtcccgcatcgttcataaattgtatcaatggagcaactatcccggctttca |
42218796 |
T |
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| Q |
101 |
cagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcacctt-ttttgccacttggagtaccttcacaaagtaac |
192 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
42218795 |
cagctctagctttgtttccatgataaatacatagattaaatatagcggtagcagcacctttttttgcctcttggagtaccttcacaaagtaac |
42218703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 42420189 - 42420375
Alignment:
| Q |
6 |
tgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatggagcaactatcccggcttttacagct |
105 |
Q |
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||||||||| ||| |||||||| ||||| |||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
42420189 |
tgcaaggatcgtcagtatagctagtgcttcgtcaaccatcccaccgcccgcatccttcataaatcgtatcaacggagcaactatcccggctttaacagct |
42420288 |
T |
|
| Q |
106 |
ctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagtaccttcacaaagtaac |
192 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |
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| T |
42420289 |
ctagctttgtttccttgataaatacatagattaaatatagcagtagctgcatcttttttgcctcttggagtaccttcacaaagtaac |
42420375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 42218637 - 42218599
Alignment:
| Q |
196 |
actaaagagagttatagctgcattttctctagcctccat |
234 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
42218637 |
actaaagagagtcgtagctgcattttctctagcctccat |
42218599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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