View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_36 (Length: 241)
Name: NF6373_low_36
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43953107 - 43952886
Alignment:
| Q |
1 |
cctcataacagtgatcagatcaacaaaagcacttaatataaacttatgagattttttctcattaacattaagataacaaaataaaatctcctccatgaag |
100 |
Q |
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| T |
43953107 |
cctcataacagtgatcagatcaacaaaagcacttaatataaacttatgagattttttctcattaacattaagataacaaaataaaatctcctccatgaag |
43953008 |
T |
|
| Q |
101 |
tcccaatcaattttcctttgattgttttcaatcttaccatactttgattccaccaattcttgcattgatcgcctgaaatcatcgtaaggactcggagaat |
200 |
Q |
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| T |
43953007 |
tcccaatcaattttcctttgattgttttcaatcttaccatactttgattccaccaattcttgcatcgatcgcctgaaatcatcgtaaggacttggagaat |
43952908 |
T |
|
| Q |
201 |
atgataacagtgcaacacaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43952907 |
atgataacagtgcaacacaatt |
43952886 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 3235621 - 3235706
Alignment:
| Q |
25 |
aaaagcacttaatataaacttatgagattttttctcattaacattaagataacaaaataaaatctcctccatgaagtcccaatcaa |
110 |
Q |
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| T |
3235621 |
aaaagcacttagtataaacttataagatttcttctcatttaagttcatataacaaaacaaaagctcttccataaaatcccaatcaa |
3235706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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