View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_low_39 (Length: 238)
Name: NF6373_low_39
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 43953243 - 43953448
Alignment:
| Q |
20 |
gttagctaattttcatgaaataaaatatgtattagaataaatgtattagggagggggttttttcttccaaaaacaatccttgaatattggagtcttatgt |
119 |
Q |
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| T |
43953243 |
gttagctaattttcatgaaataaaatatatattagaataaatgtattagggaggggtttttttcttccaaaaacaatccttgaatattggagtcttatgt |
43953342 |
T |
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| Q |
120 |
caggatccaatggtccttgagttaatgttatgcataaaactcatgcttcaaaagcatgtcaagttttatttttgtaaactaaagtatatctcttagattg |
219 |
Q |
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| T |
43953343 |
caggatccaatggtccttgagttaatgttatgcataaaactcatgcttcaaaagcatgtcaagttttatttttgtaaactaaagtatatctcttagattg |
43953442 |
T |
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| Q |
220 |
ttgtct |
225 |
Q |
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|||||| |
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| T |
43953443 |
ttgtct |
43953448 |
T |
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