View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_low_6 (Length: 472)

Name: NF6373_low_6
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_low_6
NF6373_low_6
[»] chr4 (5 HSPs)
chr4 (10-192)||(20867096-20867278)
chr4 (14-192)||(771891-772070)
chr4 (361-462)||(47522215-47522316)
chr4 (371-415)||(1877348-1877392)
chr4 (371-415)||(1891463-1891507)
[»] chr3 (4 HSPs)
chr3 (10-190)||(3710481-3710661)
chr3 (361-462)||(3710181-3710282)
chr3 (361-459)||(39705379-39705477)
chr3 (277-332)||(3710314-3710370)
[»] scaffold0484 (1 HSPs)
scaffold0484 (362-462)||(11124-11224)
[»] chr7 (3 HSPs)
chr7 (361-459)||(1888522-1888620)
chr7 (361-459)||(1902623-1902721)
chr7 (361-459)||(24187721-24187819)
[»] chr2 (7 HSPs)
chr2 (361-459)||(26719339-26719437)
chr2 (361-459)||(26733427-26733525)
chr2 (368-462)||(34529565-34529660)
chr2 (368-462)||(34543538-34543633)
chr2 (361-462)||(25483945-25484046)
chr2 (361-462)||(20371927-20372028)
chr2 (361-462)||(20621871-20621972)
[»] chr6 (8 HSPs)
chr6 (361-459)||(19828167-19828266)
chr6 (361-459)||(27535763-27535861)
chr6 (361-459)||(27549973-27550071)
chr6 (10-115)||(14474333-14474437)
chr6 (361-462)||(20532287-20532388)
chr6 (279-332)||(20532155-20532208)
chr6 (361-462)||(25550641-25550742)
chr6 (361-415)||(25992255-25992309)
[»] scaffold1904 (1 HSPs)
scaffold1904 (10-115)||(326-434)
[»] scaffold0039 (1 HSPs)
scaffold0039 (361-462)||(40459-40560)
[»] chr1 (3 HSPs)
chr1 (368-462)||(34584735-34584830)
chr1 (371-415)||(28457941-28457985)
chr1 (278-318)||(45497409-45497449)
[»] chr5 (1 HSPs)
chr5 (361-462)||(19223900-19224001)
[»] chr8 (3 HSPs)
chr8 (368-437)||(17527336-17527405)
chr8 (371-415)||(16759710-16759754)
chr8 (371-415)||(16773594-16773638)
[»] scaffold0027 (1 HSPs)
scaffold0027 (371-462)||(65347-65438)
[»] scaffold0497 (1 HSPs)
scaffold0497 (361-416)||(11402-11457)
[»] scaffold0037 (1 HSPs)
scaffold0037 (371-415)||(78050-78094)
[»] scaffold0156 (1 HSPs)
scaffold0156 (361-416)||(34979-35034)
[»] scaffold0473 (1 HSPs)
scaffold0473 (371-415)||(8825-8870)
[»] scaffold0111 (1 HSPs)
scaffold0111 (371-415)||(33431-33475)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 20867096 - 20867278
Alignment:
Q  10 aattactacctttttcccttgaatgaatccggatctctgttgtcccttttggttcggttcagattcggttttttgaacggatgttggaagcggctcggtt 109  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  20867096 aattactaccttttacccttgaatgaatccgattctctgttgtcccttttggttcggttcagattcggttttttgaatggatgttggaaacggcccggtt 20867195  T
Q  110 ctgtggaaaacggcgtcgattgttgttgttccgtccggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattctt 192  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20867196 ctgtggaaaacggcgtcgattgttgttgttccgtctggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattctt 20867278  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 772070 - 771891
Alignment:
Q  14 actacctttttcccttgaatgaatccggatctctgttgtcccttttggttcggttcagattcggtttttt-gaacggatgttggaagcggctcggttctg 112  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  772070 actaccttttacccttgaatgaatccggttctctcttgtcccttttggttcggttcagattcggtttttttgaacggatgttggaaacggcccggttctg 771971  T
Q  113 tggaaaacggcgtcgattgttgttgttccgtccggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattctt 192  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  771970 tggaaaacggcgtcgattgttgttgttccgtctggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattctt 771891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 47522215 - 47522316
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| |||||||||||||| |||||| |||||||||||| |||||||||| |   | |||| ||| | |||||||| |||||||  |||||||||    
T  47522215 gcaggtttgattttatagcattagggttgaaaagaataaggaaacaacttgcagaggcagcaaccgtgttactggatttggaaacaaaagtttgacccta 47522314  T
Q  461 tg 462  Q
    ||    
T  47522315 tg 47522316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 1877348 - 1877392
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||    
T  1877348 ttttataccattagggttgaagataataaggaaataacttgcaga 1877392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 1891463 - 1891507
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||    
T  1891463 ttttataccattagggttgaagataataaggaaataacttgcaga 1891507  T

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Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 3710661 - 3710481
Alignment:
Q  10 aattactacctttttcccttgaatgaatccggatctctgttgtcccttttggttcggttcagattcggttttttgaacggatgttggaagcggctcggtt 109  Q
    |||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||  |||||    
T  3710661 aattactaccttttacctttgaatgaatccggttctctgctgtcccttttggttcggttcagattcggttctttgaacggatgttggaaacggtccggtt 3710562  T
Q  110 ctgtggaaaacggcgtcgattgttgttgttccgtccggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattc 190  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3710561 ctgtggaaaatggcgtcgattgttgttgttccgtctggatcggcctttgtgcttcgatgatgcgtggctgaaggtggattc 3710481  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 3710282 - 3710181
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||    
T  3710282 gcaggcttgcttttatagcattagggttgaatagaataaggaaataacttgcagaggttactaccgcgttactggatttggcaacaaaaatttgacccta 3710183  T
Q  461 tg 462  Q
    ||    
T  3710182 tg 3710181  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 39705477 - 39705379
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  39705477 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 39705379  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 3710370 - 3710314
Alignment:
Q  277 atttgatgcaagtttctttgattcggtctttgtatgcagg-ttgcggctacggtttt 332  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  3710370 atttgatgcaagtttctttgattcggtctttgtatgcaggtttgcggctagggtttt 3710314  T

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Target: scaffold0484 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 11124 - 11224
Alignment:
Q  362 caggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccctat 461  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||| ||||||||||    
T  11124 caggcttgcttttatagcattagggttgaatagaataaggaaataacttgcagaggttactactgcgttactggatttggcaacaaaaatttgaccctat 11223  T
Q  462 g 462  Q
    |    
T  11224 g 11224  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 1888522 - 1888620
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1888522 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 1888620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 1902623 - 1902721
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1902623 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 1902721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 24187721 - 24187819
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24187721 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 24187819  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 26719339 - 26719437
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26719339 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 26719437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 26733427 - 26733525
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26733427 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccagatttggaaacaaaaaattgaccct 26733525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 34529565 - 34529660
Alignment:
Q  368 tgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaac-aaaaaattgaccctatg 462  Q
    ||||||||||| ||||| |||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34529565 tgcttttatagtattagggttggattgaacaaggaaataactggcagaagttactaccgcgttcccggatttggcaacaaaaaaattgaccctatg 34529660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 34543538 - 34543633
Alignment:
Q  368 tgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaac-aaaaaattgaccctatg 462  Q
    ||||||||||| ||||| |||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34543538 tgcttttatagtattagggttggattgaacaaggaaataactggcagaagttactaccgcgttcccggatttggcaacaaaaaaattgaccctatg 34543633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 25484046 - 25483945
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| |||||||  ||||| |||||||| ||||||||||||||||||||| ||||||||||| || | ||||||||||||||||| |||||||||    
T  25484046 gcaggtttgattttatacaattagggttgaataaaataaggaaataacttgcagaggttactaccgcattgctggatttggcaacaaaaacttgacccta 25483947  T
Q  461 tg 462  Q
    ||    
T  25483946 tg 25483945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 20371927 - 20372028
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||||| |  || | ||||||||||||||||  |||||||||    
T  20371927 gcaggtttgcttttatagcattagggttggatagaataaggaaatatcttgcagaaattactactgatttgctggatttggcaacaaaactttgacccta 20372026  T
Q  461 tg 462  Q
    ||    
T  20372027 tg 20372028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 20621972 - 20621871
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| |||||||||||||| |||||| ||||||||||| |||||||||||  ||| ||| | | | | ||||||||||||||||| |||||||||    
T  20621972 gcaggtttgattttatagcattagggttgaagagaataaggaagtaacttgcagagattattactgagctgctggatttggcaacaaaaacttgacccta 20621873  T
Q  461 tg 462  Q
    ||    
T  20621872 tg 20621871  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 361 - 459
Target Start/End: Original strand, 19828167 - 19828266
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaac-aaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  19828167 gcaggtttgcttttatagcattagggttggattgaataaggaaataacttgcagaagttactaccgcgttcccggatttggaaacaaaaaaattgaccct 19828266  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 27535861 - 27535763
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || || ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  27535861 gcaggtttgcttttatagcattagggttggattgagtaaggaaataacttgcagaagttactaccgccttcccagatttggaaacaaaaaattgaccct 27535763  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 27550071 - 27549973
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccct 459  Q
    ||||| |||||||||||||||||| |||| || || ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  27550071 gcaggtttgcttttatagcattagggttggattgagtaaggaaataacttgcagaagttactaccgccttcccagatttggaaacaaaaaattgaccct 27549973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 14474437 - 14474333
Alignment:
Q  10 aattactacctttttcccttgaatgaatccggatctctgttgtcccttttggttcggttcagattcggttttttgaacggatgttggaagcggctcggtt 109  Q
    |||||||||||||| || ||||||||| |||| ||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||| |||||    
T  14474437 aattactaccttttacctttgaatgaaaccggttctctattgtccctcttggttcggttcagattcgg-tctttgaacggatgttggaaacggcccggtt 14474339  T
Q  110 ctgtgg 115  Q
    ||||||    
T  14474338 ctgtgg 14474333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 20532287 - 20532388
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||  ||||||| | ||| | ||||||||||||||||  |||||||||    
T  20532287 gcaggtttgcttttatagcattagggttggatagaacaaggaaataacttgcagagattactactgagttgctggatttggcaacaaaactttgacccta 20532386  T
Q  461 tg 462  Q
    ||    
T  20532387 tg 20532388  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 20532155 - 20532208
Alignment:
Q  279 ttgatgcaagtttctttgattcggtctttgtatgcaggttgcggctacggtttt 332  Q
    |||||||| ||||||||||||||||||| | |||||| ||||||||| ||||||    
T  20532155 ttgatgcaggtttctttgattcggtcttgggatgcagtttgcggctagggtttt 20532208  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 25550742 - 25550641
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| |||||||||||||| |||||| |||| ||||||| |||||||||| |   | |||| ||| | |||||||| |||||||  |||||||||    
T  25550742 gcaggtttgattttatagcattagggttgaagagaaaaaggaaacaacttgcagaggcagcaaccgtgttactggatttggaaacaaaagtttgacccta 25550643  T
Q  461 tg 462  Q
    ||    
T  25550642 tg 25550641  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 25992309 - 25992255
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    ||||| ||| |||||||||||||| |||||| |||| ||||||| ||||||||||    
T  25992309 gcaggtttgattttatagcattagggttgaagagaaaaaggaaacaacttgcaga 25992255  T

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Target: scaffold1904 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold1904
Description:

Target: scaffold1904; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 434 - 326
Alignment:
Q  10 aattactacctttttcccttgaatgaatccggatctctgttgtcccttttggttcggttcagattcggtt---ttttgaacggatgttggaagcggctcg 106  Q
    |||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||| |||| ||    
T  434 aattactaccttttacccttgaatgaaaccggttctctattgtcccttttggttcggttcagattcggtttttttttgaacggatgttggaaacggcccg 335  T
Q  107 gttctgtgg 115  Q
    |||||||||    
T  334 gttctgtgg 326  T

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Target: scaffold0039 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 361 - 462
Target Start/End: Original strand, 40459 - 40560
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||    
T  40459 gcaggtttgattttataccattagggttgaatagaataaggaaataacttgcagaggttactaccgcgttgctggatttggcaacaaaaacttgacccta 40558  T
Q  461 tg 462  Q
    ||    
T  40559 tg 40560  T

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Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 34584830 - 34584735
Alignment:
Q  368 tgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaa-aaaattgaccctatg 462  Q
    ||||||||||| ||||| |||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34584830 tgcttttatagtattagggttggattgaacaaggaaataactggcagaagttactaccgcgttcccggatttggcaacaaaaaaattgaccctatg 34584735  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 28457985 - 28457941
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    |||||||||||||| |||||| |||| ||||||| ||||||||||    
T  28457985 ttttatagcattagggttgaagagaaaaaggaaacaacttgcaga 28457941  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 45497449 - 45497409
Alignment:
Q  278 tttgatgcaagtttctttgattcggtctttgtatgcaggtt 318  Q
    ||||||||| |||||||||||||| ||||||||| ||||||    
T  45497449 tttgatgcatgtttctttgattcgatctttgtatacaggtt 45497409  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 19224001 - 19223900
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgacccta 460  Q
    ||||| ||| ||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||| || | ||||||||||||||||| |||||||||    
T  19224001 gcaggtttgattttataccattagggttgaataaaataaggaaataacttgcagaggttactaccgcattgctggatttggcaacaaaaacttgacccta 19223902  T
Q  461 tg 462  Q
    ||    
T  19223901 tg 19223900  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 17527405 - 17527336
Alignment:
Q  368 tgcttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggat 437  Q
    |||||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  17527405 tgcttttatatcattagggttgaagataataaggaaataacttgcagaagttactaccgcgttcccggat 17527336  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 16759754 - 16759710
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||    
T  16759754 ttttataccattagggttgaagataataaggaaataacttgcaga 16759710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 16773638 - 16773594
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    ||||||| |||||| |||||| | |||||||||||||||||||||    
T  16773638 ttttataccattagggttgaagataataaggaaataacttgcaga 16773594  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 462
Target Start/End: Original strand, 65347 - 65438
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcagaagttactaccgcgttcccggatttggcaacaaaaaattgaccctatg 462  Q
    ||||||| |||||| ||| ||  ||| |||| |||||||||||||  ||||||||| ||| | ||||||||||||||||| |||||||||||    
T  65347 ttttataccattagggttaaagggaaaaagggaataacttgcagagtttactaccgtgttgctggatttggcaacaaaaacttgaccctatg 65438  T

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Target: scaffold0497 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 11457 - 11402
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaa 416  Q
    ||||| ||| |||||||||||||| |||||| |||| |||||||||||||||||||    
T  11457 gcaggtttgattttatagcattagggttgaagagaaaaaggaaataacttgcagaa 11402  T

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Target: scaffold0037 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 78050 - 78094
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    |||||||||||||| |||||| || ||||||||||||||||||||    
T  78050 ttttatagcattagggttgaagagtataaggaaataacttgcaga 78094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 34979 - 35034
Alignment:
Q  361 gcaggcttgcttttatagcattagagttgaatagaataaggaaataacttgcagaa 416  Q
    ||||| ||| |||||||||||||| ||||||  ||| |||||||||||||||||||    
T  34979 gcaggtttgattttatagcattagggttgaagggaaaaaggaaataacttgcagaa 35034  T

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Target: scaffold0473 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 8825 - 8870
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaat-aacttgcaga 415  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||    
T  8825 ttttatagcattagggttgaaaagaataaggaaataaacttgcaga 8870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 33475 - 33431
Alignment:
Q  371 ttttatagcattagagttgaatagaataaggaaataacttgcaga 415  Q
    |||||||||||||| |||||| |||| ||||||| ||||||||||    
T  33475 ttttatagcattagggttgaagagaaaaaggaaacaacttgcaga 33431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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