View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6373_low_7 (Length: 428)
Name: NF6373_low_7
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 37087607 - 37088007
Alignment:
| Q |
18 |
tgttgtgttgcaacagggtgtgtgtatgttaactttagctacaacaattcctagcatgacacctccaccatgcagtgaagtaagaagacaacaccatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37087607 |
tgttgtgttgcaacagggtgtgtgtatgttaactttagctacaacaattcctagcatgacacctccaccatgcagtgaagtaagaagacaacaccatcaa |
37087706 |
T |
|
| Q |
118 |
tgcattcaagcaagtggcaaacagttatcacttctctttgcagcactttatacaatagctttaggtggtggaggaataaaatccaatgtgtcaggatttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37087707 |
tgcattcaagcaagtggcaaacagttatcacttctctttgcagcactttatacaatagctttaggtggtggaggaataaaatccaatgtgtcaggatttg |
37087806 |
T |
|
| Q |
218 |
gatctgatcaatttgacacaaatgatccaaaggaagagaagaatatgatatttttcttcaatagattctacttttttataagtattggatccttattttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37087807 |
gatctgatcaatttgacacaaatgatccaaaggaagagaagaatatgatatttttcttcaatagattctacttttttataagtattggatccttgttttc |
37087906 |
T |
|
| Q |
318 |
agtggttgtattggtttatgttcaagacaatataggaagaggttggggatatggaatttcagcagggacaatgttggtagcagttggtattttgctctgt |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37087907 |
agttgttgtattggtttatgttcaagacaatataggaagaggttggggatatggaatttcagcagggacaatgttggtagcagttggtattttgctttgt |
37088006 |
T |
|
| Q |
418 |
g |
418 |
Q |
| |
|
| |
|
|
| T |
37088007 |
g |
37088007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University