View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_low_9 (Length: 418)

Name: NF6373_low_9
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_low_9
NF6373_low_9
[»] chr7 (41 HSPs)
chr7 (16-166)||(39646580-39646730)
chr7 (259-409)||(39646342-39646492)
chr7 (68-166)||(37925952-37926050)
chr7 (68-166)||(28074138-28074236)
chr7 (68-166)||(33519159-33519257)
chr7 (68-166)||(36267588-36267686)
chr7 (44-146)||(48013634-48013736)
chr7 (68-166)||(48881593-48881691)
chr7 (44-166)||(23116270-23116393)
chr7 (46-146)||(21857478-21857577)
chr7 (68-166)||(37620885-37620983)
chr7 (73-143)||(35422098-35422168)
chr7 (68-166)||(31364080-31364175)
chr7 (72-166)||(3215900-3215993)
chr7 (44-101)||(48881735-48881792)
chr7 (82-146)||(2087788-2087852)
chr7 (44-104)||(17852882-17852942)
chr7 (68-127)||(33519083-33519142)
chr7 (90-161)||(48015323-48015394)
chr7 (44-102)||(17853045-17853103)
chr7 (72-166)||(30592292-30592386)
chr7 (44-165)||(48094005-48094126)
chr7 (44-105)||(37417805-37417866)
chr7 (103-146)||(8122279-8122322)
chr7 (68-122)||(37925876-37925930)
chr7 (89-137)||(3143624-3143672)
chr7 (44-75)||(1051710-1051741)
chr7 (44-99)||(10315624-10315679)
chr7 (44-75)||(31571682-31571713)
chr7 (44-75)||(36267765-36267796)
chr7 (44-75)||(39856077-39856108)
chr7 (125-166)||(12670928-12670969)
chr7 (105-166)||(16833806-16833867)
chr7 (46-75)||(31364256-31364285)
chr7 (46-75)||(33655320-33655349)
chr7 (68-101)||(36267729-36267762)
chr7 (46-75)||(42306542-42306571)
chr7 (49-101)||(1013940-1013992)
chr7 (45-73)||(24970379-24970407)
chr7 (46-74)||(26365770-26365798)
chr7 (44-104)||(40196705-40196764)
[»] chr4 (48 HSPs)
chr4 (46-166)||(22186830-22186950)
chr4 (84-166)||(29993822-29993904)
chr4 (44-166)||(43961521-43961643)
chr4 (44-166)||(55080690-55080812)
chr4 (68-166)||(54576362-54576460)
chr4 (68-166)||(37761575-37761673)
chr4 (44-166)||(7977506-7977629)
chr4 (82-160)||(5825013-5825091)
chr4 (44-166)||(44145842-44145964)
chr4 (45-166)||(17182495-17182618)
chr4 (44-166)||(11089627-11089752)
chr4 (84-166)||(4437476-4437558)
chr4 (73-166)||(54001146-54001236)
chr4 (72-166)||(21694929-21695022)
chr4 (68-166)||(47846090-47846188)
chr4 (89-166)||(51329906-51329983)
chr4 (44-100)||(4437601-4437657)
chr4 (44-100)||(56135908-56135964)
chr4 (82-137)||(34995189-34995244)
chr4 (97-165)||(9030328-9030396)
chr4 (44-116)||(41227494-41227566)
chr4 (46-137)||(35543320-35543411)
chr4 (84-166)||(14539383-14539465)
chr4 (90-166)||(55510281-55510356)
chr4 (68-123)||(6938401-6938456)
chr4 (44-102)||(34110979-34111037)
chr4 (49-107)||(46007715-46007773)
chr4 (44-116)||(27775584-27775661)
chr4 (44-105)||(41174357-41174417)
chr4 (106-159)||(51075215-51075268)
chr4 (44-75)||(1968571-1968602)
chr4 (44-75)||(26166938-26166969)
chr4 (44-75)||(37711139-37711170)
chr4 (67-122)||(43961444-43961499)
chr4 (44-75)||(45741891-45741922)
chr4 (44-75)||(49735469-49735500)
chr4 (44-75)||(49735704-49735735)
chr4 (67-122)||(51074375-51074430)
chr4 (44-75)||(54320646-54320677)
chr4 (44-75)||(54935068-54935099)
chr4 (44-75)||(56135750-56135781)
chr4 (68-102)||(44145808-44145842)
chr4 (68-122)||(56135784-56135838)
chr4 (44-121)||(23813112-23813189)
chr4 (46-75)||(46007913-46007942)
chr4 (44-73)||(54320436-54320465)
chr4 (72-116)||(2247842-2247886)
chr4 (44-143)||(47433719-47433819)
[»] chr3 (41 HSPs)
chr3 (42-166)||(40858676-40858800)
chr3 (44-166)||(42772143-42772265)
chr3 (68-166)||(34641103-34641199)
chr3 (44-166)||(41414189-41414312)
chr3 (44-143)||(48683747-48683847)
chr3 (46-146)||(54985706-54985806)
chr3 (44-122)||(34641003-34641081)
chr3 (68-166)||(44412472-44412570)
chr3 (82-166)||(24253833-24253917)
chr3 (68-166)||(26135908-26136006)
chr3 (44-122)||(40858576-40858654)
chr3 (72-143)||(18086019-18086090)
chr3 (82-164)||(55428492-55428574)
chr3 (46-122)||(48683625-48683701)
chr3 (47-102)||(46978441-46978496)
chr3 (69-166)||(8432297-8432392)
chr3 (84-166)||(10943665-10943747)
chr3 (44-129)||(42699761-42699845)
chr3 (82-146)||(17474255-17474319)
chr3 (90-166)||(42699669-42699745)
chr3 (91-166)||(21090129-21090204)
chr3 (44-123)||(30200099-30200178)
chr3 (83-166)||(36727287-36727370)
chr3 (44-123)||(37102160-37102239)
chr3 (44-122)||(37102304-37102382)
chr3 (118-165)||(27197734-27197781)
chr3 (44-100)||(651741-651798)
chr3 (44-116)||(25179905-25179977)
chr3 (110-166)||(46978538-46978594)
chr3 (44-123)||(220409-220487)
chr3 (44-103)||(2387934-2387993)
chr3 (44-123)||(21773936-21774015)
chr3 (44-101)||(49815433-49815490)
chr3 (68-100)||(41414113-41414145)
chr3 (47-102)||(8432434-8432489)
chr3 (50-101)||(46556160-46556211)
chr3 (48-78)||(9312678-9312708)
chr3 (84-166)||(45663197-45663277)
chr3 (44-73)||(24253722-24253751)
chr3 (68-101)||(42772079-42772112)
chr3 (47-75)||(55428591-55428619)
[»] chr1 (30 HSPs)
chr1 (68-165)||(35512909-35513006)
chr1 (44-146)||(47071182-47071284)
chr1 (68-166)||(51303419-51303517)
chr1 (68-166)||(1085524-1085623)
chr1 (47-146)||(1344679-1344778)
chr1 (69-166)||(25268375-25268472)
chr1 (45-166)||(33643379-33643499)
chr1 (82-163)||(13386968-13387049)
chr1 (47-166)||(525116-525232)
chr1 (68-166)||(40709327-40709425)
chr1 (82-166)||(35927924-35928007)
chr1 (47-122)||(2506553-2506628)
chr1 (44-101)||(8529810-8529867)
chr1 (45-102)||(40287433-40287490)
chr1 (44-104)||(26941016-26941076)
chr1 (46-101)||(1344563-1344617)
chr1 (84-166)||(2506650-2506732)
chr1 (44-100)||(20607224-20607285)
chr1 (89-166)||(40287312-40287388)
chr1 (68-139)||(20607354-20607426)
chr1 (46-100)||(2470912-2470966)
chr1 (47-105)||(50744453-50744511)
chr1 (47-122)||(41676436-41676516)
chr1 (82-166)||(52707756-52707840)
chr1 (44-75)||(12234011-12234042)
chr1 (44-75)||(26324015-26324046)
chr1 (44-75)||(30010333-30010364)
chr1 (44-75)||(41498405-41498436)
chr1 (68-105)||(2859104-2859141)
chr1 (68-100)||(35927849-35927881)
[»] chr8 (38 HSPs)
chr8 (68-166)||(12022178-12022276)
chr8 (44-166)||(20472703-20472825)
chr8 (68-166)||(43732798-43732896)
chr8 (82-166)||(8815190-8815274)
chr8 (90-166)||(16024265-16024341)
chr8 (68-166)||(30365241-30365339)
chr8 (82-165)||(29937614-29937697)
chr8 (44-162)||(9933356-9933474)
chr8 (71-166)||(34196420-34196514)
chr8 (90-145)||(8671849-8671904)
chr8 (91-146)||(40633047-40633102)
chr8 (68-166)||(39449415-39449513)
chr8 (44-123)||(9718490-9718569)
chr8 (67-122)||(12022298-12022353)
chr8 (44-102)||(39449315-39449373)
chr8 (90-146)||(6453315-6453371)
chr8 (95-166)||(9434360-9434432)
chr8 (44-105)||(16652959-16653021)
chr8 (109-166)||(43826443-43826500)
chr8 (47-115)||(1026863-1026931)
chr8 (47-115)||(29358354-29358422)
chr8 (44-115)||(2248614-2248685)
chr8 (44-75)||(12022355-12022386)
chr8 (44-75)||(43732680-43732711)
chr8 (44-78)||(7502965-7502999)
chr8 (68-122)||(8815296-8815350)
chr8 (44-74)||(8815354-8815384)
chr8 (68-122)||(16024188-16024242)
chr8 (68-105)||(30581985-30582022)
chr8 (45-122)||(35694742-35694819)
chr8 (82-115)||(36166251-36166284)
chr8 (44-97)||(36308853-36308906)
chr8 (46-78)||(2412967-2412999)
chr8 (44-72)||(6315067-6315095)
chr8 (47-75)||(7394673-7394701)
chr8 (44-72)||(9718694-9718722)
chr8 (44-100)||(11785537-11785593)
chr8 (44-72)||(30365131-30365159)
[»] scaffold0007 (1 HSPs)
scaffold0007 (68-162)||(242331-242425)
[»] chr2 (42 HSPs)
chr2 (46-166)||(33265717-33265838)
chr2 (68-166)||(15085734-15085833)
chr2 (68-147)||(22356133-22356213)
chr2 (69-165)||(42813732-42813828)
chr2 (82-166)||(45257418-45257502)
chr2 (51-166)||(36052105-36052220)
chr2 (44-159)||(34187695-34187812)
chr2 (106-166)||(2381060-2381120)
chr2 (89-166)||(3094409-3094486)
chr2 (82-162)||(42296352-42296432)
chr2 (44-123)||(1583231-1583310)
chr2 (91-166)||(45098280-45098355)
chr2 (76-146)||(9313118-9313188)
chr2 (49-123)||(14196823-14196897)
chr2 (89-162)||(31061474-31061547)
chr2 (90-166)||(35325380-35325456)
chr2 (44-115)||(39821831-39821902)
chr2 (44-166)||(21502144-21502266)
chr2 (44-122)||(22355976-22356054)
chr2 (89-146)||(1052811-1052868)
chr2 (68-122)||(1270433-1270487)
chr2 (89-146)||(8554355-8554412)
chr2 (84-145)||(16713657-16713718)
chr2 (44-105)||(23748106-23748167)
chr2 (51-121)||(14187092-14187162)
chr2 (46-116)||(39732742-39732812)
chr2 (46-115)||(12541773-12541847)
chr2 (72-129)||(15085849-15085906)
chr2 (67-116)||(31061393-31061442)
chr2 (110-166)||(31928121-31928177)
chr2 (67-122)||(1052911-1052966)
chr2 (44-75)||(17379847-17379878)
chr2 (44-75)||(17380053-17380084)
chr2 (44-75)||(35736176-35736207)
chr2 (44-75)||(36347753-36347784)
chr2 (68-122)||(2381142-2381196)
chr2 (68-166)||(31795804-31795902)
chr2 (68-129)||(35736335-35736396)
chr2 (46-75)||(36567064-36567093)
chr2 (44-73)||(40022364-40022393)
chr2 (46-78)||(19567025-19567057)
chr2 (43-75)||(36046204-36046236)
[»] chr5 (41 HSPs)
chr5 (44-166)||(40305671-40305798)
chr5 (68-166)||(10043363-10043461)
chr5 (68-166)||(34980921-34981019)
chr5 (68-159)||(33744228-33744319)
chr5 (82-163)||(6597839-6597920)
chr5 (44-165)||(8551428-8551550)
chr5 (68-166)||(10204687-10204785)
chr5 (118-166)||(5688524-5688572)
chr5 (82-146)||(6382458-6382522)
chr5 (68-143)||(15986659-15986734)
chr5 (89-146)||(21581078-21581135)
chr5 (47-166)||(13839742-13839861)
chr5 (47-122)||(29002220-29002295)
chr5 (92-146)||(2183945-2183999)
chr5 (44-105)||(9856891-9856952)
chr5 (84-165)||(12035987-12036067)
chr5 (44-128)||(22023517-22023602)
chr5 (67-122)||(5688447-5688502)
chr5 (82-165)||(10043058-10043141)
chr5 (44-116)||(15986785-15986867)
chr5 (68-123)||(1657967-1658022)
chr5 (44-75)||(5688602-5688633)
chr5 (47-78)||(11756882-11756913)
chr5 (44-75)||(13634712-13634743)
chr5 (44-75)||(13634923-13634954)
chr5 (44-75)||(14245089-14245120)
chr5 (44-75)||(14245258-14245289)
chr5 (44-75)||(16938480-16938511)
chr5 (44-75)||(20147082-20147113)
chr5 (45-75)||(22022849-22022879)
chr5 (68-102)||(33744368-33744402)
chr5 (44-110)||(39965996-39966062)
chr5 (68-101)||(10204611-10204644)
chr5 (46-75)||(14681473-14681502)
chr5 (48-77)||(37551178-37551207)
chr5 (48-77)||(37654008-37654037)
chr5 (47-75)||(2550564-2550592)
chr5 (45-73)||(16502006-16502034)
chr5 (44-100)||(19177273-19177329)
chr5 (44-72)||(26414894-26414922)
chr5 (44-72)||(40305880-40305908)
[»] chr6 (30 HSPs)
chr6 (82-146)||(9051583-9051647)
chr6 (44-166)||(4097236-4097368)
chr6 (82-166)||(31799032-31799116)
chr6 (82-166)||(3841196-3841281)
chr6 (96-163)||(15323339-15323406)
chr6 (96-163)||(15353477-15353544)
chr6 (82-166)||(26318416-26318500)
chr6 (68-166)||(10293359-10293457)
chr6 (102-163)||(15373668-15373729)
chr6 (82-166)||(25468448-25468532)
chr6 (44-130)||(31849257-31849343)
chr6 (68-162)||(34176606-34176700)
chr6 (44-104)||(1300630-1300690)
chr6 (44-104)||(21606855-21606915)
chr6 (69-115)||(10293286-10293332)
chr6 (44-127)||(15353365-15353458)
chr6 (44-99)||(4097419-4097479)
chr6 (68-116)||(23091030-23091078)
chr6 (84-140)||(28477126-28477182)
chr6 (84-140)||(29693023-29693079)
chr6 (44-107)||(5381199-5381262)
chr6 (44-75)||(10818230-10818261)
chr6 (44-75)||(14515474-14515505)
chr6 (44-75)||(15323226-15323257)
chr6 (68-166)||(10818327-10818425)
chr6 (46-75)||(9719034-9719063)
chr6 (46-75)||(21607056-21607085)
chr6 (68-112)||(4097678-4097722)
chr6 (43-75)||(9719242-9719274)
chr6 (44-72)||(31798919-31798947)
[»] scaffold0012 (2 HSPs)
scaffold0012 (44-122)||(184612-184690)
scaffold0012 (72-166)||(184718-184812)
[»] scaffold0026 (3 HSPs)
scaffold0026 (82-165)||(1446-1529)
scaffold0026 (68-121)||(1554-1607)
scaffold0026 (46-75)||(1175-1204)
[»] scaffold0095 (2 HSPs)
scaffold0095 (68-166)||(8258-8356)
scaffold0095 (44-102)||(8158-8216)
[»] scaffold0071 (2 HSPs)
scaffold0071 (44-162)||(53000-53116)
scaffold0071 (44-101)||(52897-52954)
[»] scaffold0240 (1 HSPs)
scaffold0240 (44-166)||(17651-17781)
[»] scaffold0119 (3 HSPs)
scaffold0119 (83-146)||(37514-37577)
scaffold0119 (68-122)||(30750-30804)
scaffold0119 (70-122)||(37420-37472)
[»] scaffold0096 (1 HSPs)
scaffold0096 (44-128)||(6733-6816)
[»] scaffold0018 (1 HSPs)
scaffold0018 (68-166)||(69241-69340)
[»] scaffold1414 (1 HSPs)
scaffold1414 (89-166)||(412-490)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 39646730 - 39646580
Alignment:
Q  16 aaaactttccacttcaatagtcttagatgggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39646730 aaaactttccacttcaatagtcttagacggatgtgtttggattgagggtttaggaggggatgactcacttttattttttaaattacggacattataaaat 39646631  T
Q  116 gatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39646630 gatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 39646580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 259 - 409
Target Start/End: Complemental strand, 39646492 - 39646342
Alignment:
Q  259 aaaccgtcaatccaaacacaccctaaatgttcaatacgtgaccatagatattgcaacattttgttcaagatattggaactgcaatattagtataatttat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39646492 aaaccgtcaatccaaacacaccctaaatgttcaatacgtgaccatagatattgcaacattttgttcaagatattggaactgcaatattagtataatttat 39646393  T
Q  359 acnnnnnnngttgttgaagggatatatactatgttttttattaagtattat 409  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||    
T  39646392 actttttttgttgttgaagggatatatactatgttttttattaagtattat 39646342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 37926050 - 37925952
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| |||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37926050 ggaggggaggactcatttttcttttctaaattacggacattataaaatgatgtttagaaaattgaattaacaacatgattgatgatgatataatacttc 37925952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 28074138 - 28074236
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||    
T  28074138 ggaggggagaactcacttttcttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacctgataaatgatcatataatacttc 28074236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 33519257 - 33519159
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| | |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  33519257 ggaggggagggattacttttcttctttaaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttc 33519159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 36267588 - 36267686
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||||| ||||||||||||    
T  36267588 ggaggggagggcttagttttcttttttaaattacggatattataaaatgatttttagaaaattgaatcaacaatatgataaatgatcatataatacttc 36267686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 48013736 - 48013634
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||||||| ||||| |||||||||||| ||| ||||||  ||||||||| || ||| ||||||||| |||||||||||||||||||||||||||    
T  48013736 gggtgtgtttggatggagggattaggaggggagagcttacttttcgtttttaaatcacagactttataaaataatttttagaaaattgaattaacaacat 48013637  T
Q  144 gat 146  Q
    |||    
T  48013636 gat 48013634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 48881593 - 48881691
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||||| ||||||| ||||    
T  48881593 ggaggggatggcttacttttcttttttaaattacggacattataaaataattttcagaaaattgaattaacaacatgataaatgattatataatgcttc 48881691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 23116270 - 23116393
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaa-tgatttttagaaaattgaattaacaaca 142  Q
    |||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||| |||| ||||||| || || ||| ||||||||| || |||||    
T  23116270 gggtgtgtttggatggagggtttaggaagggagggcttacttttcttttttaaattacagacactataaaagtgtttattaaaaaattgaaatagcaaca 23116369  T
Q  143 tgattgatgatgatataatacttc 166  Q
    ||||  ||||| ||||||||||||    
T  23116370 tgataaatgattatataatacttc 23116393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 21857577 - 21857478
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 145  Q
    ||||||||| || ||| |||||||||| |||| || |||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21857577 gtgtgtttgaatggagtgtttaggaggagaggacttacttttctcttttaa-ttacgaacattataaaatgatttttagaaaattgaattaacaacatga 21857479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 37620983 - 37620885
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| |  ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||  | ||| ||||||||||||    
T  37620983 ggaggggagggtttgcttttcttttttaaattatggacattataaaatgatttttggaaaattgaattatcaacatgataaaagattatataatacttc 37620885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 35422168 - 35422098
Alignment:
Q  73 ggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||| | |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35422168 ggagggtttacttttctttttaaaattacggacattataaaataatttttagaaaattgaattaacaacat 35422098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 31364080 - 31364175
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| ||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| |   ||||| ||||||||||||    
T  31364080 ggaggggagagcttacttttcttttctaaattacggacattataaaatgattttaagaaaattgaatcaacgacataa---atgatcatataatacttc 31364175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 3215900 - 3215993
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| | |||| ||||| |||||||  || |||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||    
T  3215900 gggagggcttagttttctttttcaaattacaaac-ttataaaatgatttttagaaaattgaattaacaatatgataaatgatcatataatacttc 3215993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 48881792 - 48881735
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  48881792 gggtgtgtttggattgagggtttaggaggggaaggttcacttttaatttttaaattac 48881735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 2087788 - 2087852
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||| |||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||    
T  2087788 acttttcttttttaaattacggatattataaaataatttttaaaaaaatgaattaacaacatgat 2087852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 17852882 - 17852942
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgga 104  Q
    |||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  17852882 gggtgtgtttagattgagggtttaggaggggagggattacttttcttttttaaattacgga 17852942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 33519083 - 33519142
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaa 127  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  33519083 ggaggggagggctcacttttattttttaaattacgaacaatataaaatgtttttttgaaa 33519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 48015394 - 48015323
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataat 161  Q
    |||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||  ||||| |||||||    
T  48015394 tttttaaattacagactttataaaataatttttggaaaattgaattaacaacatgataaatgatcatataat 48015323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 17853103 - 17853045
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||    
T  17853103 gggtgtgtttggatggagggtttaggaggggagggcttacttttcatttttaaattacg 17853045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 30592292 - 30592386
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| |||||| ||||||||||||| |||| |||||||||||||||| ||||||||| |||  | |||||  || || ||||||||||||    
T  30592292 gggagggcttacttttcttttttaaattacagacactataaaatgatttttaaaaaattgaaataatcatatgataaataatcatataatacttc 30592386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 48094126 - 48094005
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    ||||||||||||||  ||| ||||||||||||||  | |||||| |||||||||||||| ||  ||||||||  |||||| | ||||||| ||| || ||    
T  48094126 gggtgtgtttggatgtaggatttaggaggggaggatttacttttcttttttaaattacgaacgctataaaatcttttttatagaattgaaataataaaat 48094027  T
Q  144 gattgatgatgatataatactt 165  Q
    |||  ||||| |||||||||||    
T  48094026 gataaatgatcatataatactt 48094005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 37417866 - 37417805
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggac 105  Q
    |||||||||||||||||||||||||||||||| || | ||||||  ||||||||| ||||||    
T  37417866 gggtgtgtttggattgagggtttaggaggggatggtttacttttcatttttaaataacggac 37417805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 8122322 - 8122279
Alignment:
Q  103 gacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  8122322 gacattataaaataatttttagaaaattgaattaacaagatgat 8122279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 37925876 - 37925930
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||| ||||||||||||||||||||||| ||| | ||||||| |||||    
T  37925876 ggaggggagggttcacttttattttttaaattacgaacaatgtaaaatgtttttt 37925930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 3143672 - 3143624
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaa 137  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  3143672 ttttttaaattaatgacattataaaataatttttaaaaaattgaattaa 3143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 1051741 - 1051710
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  1051741 gggtgtgtttggattgagggtttaggagggga 1051710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 10315624 - 10315679
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatt 99  Q
    ||||||||||||||||| | ||||||||||||||  | |||||| |||||||||||    
T  10315624 gggtgtgtttggattgaagatttaggaggggaggatttacttttcttttttaaatt 10315679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 31571713 - 31571682
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  31571713 gggtgtgtttggattgagggtttaggagggga 31571682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 36267796 - 36267765
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  36267796 gggtgtgtttggattgagggtttaggagggga 36267765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 39856108 - 39856077
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  39856108 gggtgtgtttggattgagggtttaggagggga 39856077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 12670928 - 12670969
Alignment:
Q  125 aaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  12670928 aaaattgaattaacaacatgataaatgatcatataatacttc 12670969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 16833867 - 16833806
Alignment:
Q  105 cattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||| || ||||||| ||||||||||||| ||||||||  ||||| || |||||||||    
T  16833867 cattataatataatttttataaaattgaattaataacatgataaatgatcatgtaatacttc 16833806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 31364285 - 31364256
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  31364285 gtgtgtttggattgagggtttaggagggga 31364256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 33655349 - 33655320
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  33655349 gtgtgtttggattgagggtttaggagggga 33655320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 36267762 - 36267729
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattac 101  Q
    ||||||||||||||| ||||||||||||||||||    
T  36267762 ggaggggagggctcatttttattttttaaattac 36267729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 42306571 - 42306542
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  42306571 gtgtgtttggattgagggtttaggagggga 42306542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 1013940 - 1013992
Alignment:
Q  49 tgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    ||||||||| |||||||| |||||||||| || |||||| | |||||||||||    
T  1013940 tgtttggatggagggttttggaggggaggacttacttttctcttttaaattac 1013992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 24970407 - 24970379
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggg 73  Q
    |||||||||||||||||||||||||||||    
T  24970407 ggtgtgtttggattgagggtttaggaggg 24970379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 26365770 - 26365798
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggg 74  Q
    |||||||||||||||||||||||||||||    
T  26365770 gtgtgtttggattgagggtttaggagggg 26365798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 40196764 - 40196705
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgga 104  Q
    |||||| |||||||||||||||| |||||||| || | ||||||  |||||||||||||||    
T  40196764 gggtgtatttggattgagggtttgggagggga-ggtttactttttgtttttaaattacgga 40196705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 22186950 - 22186830
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 145  Q
    |||||||||||| |||||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22186950 gtgtgtttggatggagggtttaaaaggggaggactcacttttcttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 22186851  T
Q  146 ttgatgatgatataatacttc 166  Q
    |  ||||| ||||||||||||    
T  22186850 taaatgattatataatacttc 22186830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 29993822 - 29993904
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29993822 ttttcttttttaaattacggacactataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 29993904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 43961643 - 43961521
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||||||| ||||| ||| |||||||||||| | |||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  43961643 gggtgtgtttggatggagggattatgaggggagggcttatttttcttttttaaattatgaacattataaaatgatttttagaaaattgaattatcaacat 43961544  T
Q  144 gattgatgatgatataatacttc 166  Q
    |||  ||||| ||||||||||||    
T  43961543 gataaatgatcatataatacttc 43961521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 55080812 - 55080690
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||||||| |||||||||||| |||||| || |||||| |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  55080812 gggtgtgtttggatggagggtttaggatgggaggacttacttttcttttttaaattacgaacattataaaataatttttagaaaatttaattaacaacat 55080713  T
Q  144 gattgatgatgatataatacttc 166  Q
    |||  ||||| ||| ||||||||    
T  55080712 gataaatgatcataaaatacttc 55080690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 54576362 - 54576460
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||| ||||||||||||    
T  54576362 ggaggggagggcttacttttcttttttagattacggacattataaaatgatttatagaaaattgaattaacaacgtgataaatgattatataatacttc 54576460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 37761673 - 37761575
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||  ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||| |||||    
T  37761673 ggaggggagggcttccttttcttttttaaattatggacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttc 37761575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 7977506 - 7977629
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttatttt-ttaaattacggacattataaaatgatttttagaaaattgaattaacaaca 142  Q
    |||||||||||||| |||||    ||||||||||||| |||||| |||| |||||||||| |||||||||||| || ||| |||||||||||||||||||    
T  7977506 gggtgtgtttggatggagggaaagggaggggagggcttacttttctttttttaaattacgaacattataaaataatattttgaaaattgaattaacaaca 7977605  T
Q  143 tgattgatgatgatataatacttc 166  Q
    ||||  ||||| ||||||||||||    
T  7977606 tgataaatgatcatataatacttc 7977629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 5825091 - 5825013
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataa 160  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  5825091 acttttcttttttgaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataa 5825013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 44145964 - 44145842
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||| ||||||  |||||||||||||||||||||| || ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||    
T  44145964 gggtgtatttggaaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcat 44145865  T
Q  144 gattgatgatgatataatacttc 166  Q
     ||  ||||| || |||||||||    
T  44145864 tataaatgatcatgtaatacttc 44145842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 17182495 - 17182618
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttag--aaaattgaattaacaaca 142  Q
    ||||||||||||| |||| |||||||||||| |  | |||||| ||||||||||||  ||| |||||||||||||||| |  |||||||||||||||| |    
T  17182495 ggtgtgtttggatagaggttttaggaggggaagatttacttttcttttttaaattattgacgttataaaatgattttttgcaaaaattgaattaacaata 17182594  T
Q  143 tgattgatgatgatataatacttc 166  Q
    ||||  ||||| ||||||||||||    
T  17182595 tgataaatgatcatataatacttc 17182618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 11089752 - 11089627
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagg---gctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaa 140  Q
    ||||||||||||||||||| ||||| |||||| |   | | || ||| ||||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  11089752 gggtgtgtttggattgaggatttagaaggggaagatggtttacatttcttttttaaattacggactttataaaatattttttagaaaattgaattaacaa 11089653  T
Q  141 catgattgatgatgatataatacttc 166  Q
    ||| ||  ||||| ||||| ||||||    
T  11089652 catcataaatgatcatatattacttc 11089627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 4437476 - 4437558
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||   |||| ||||||||||||    
T  4437476 ttttcttttttaaattatggatattataaaatgatttttaaaaaattgaattaacaacatgataattgatcatataatacttc 4437558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 54001146 - 54001236
Alignment:
Q  73 ggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| ||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||   ||||||||  ||||| ||||||||||||    
T  54001146 ggagagcttacttttgttttttaaattacggacattataaaataatttttaaaaaattgaatt---aacatgataaatgatcatataatacttc 54001236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 21694929 - 21695022
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||| ||||||  |||||||| |||||| |||| | ||||| ||||||||||||    
T  21694929 gggagggcttacttttcttttttaaattacggacactataaaatggtttttaataaattgaaataacaaaatga-taatgatcatataatacttc 21695022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 47846090 - 47846188
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| | | |||||| |||||||||||  |||||||||||||| ||||||| ||||||||||||| ||||||||  || || ||||||||||||    
T  47846090 ggaggggagagtttacttttcttttttaaattctggacattataaaataatttttacaaaattgaattaagaacatgataaataatcatataatacttc 47846188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 51329983 - 51329906
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||| ||| |||||||||| |||| ||||||||||||||||||| |||||  ||||| ||||||||||||    
T  51329983 ttttttaaattagggatattataaaataatttatagaaaattgaattaacaaaatgataaatgattatataatacttc 51329906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 4437657 - 4437601
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatta 100  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  4437657 gggtgtgtttggattgaaggtttaggaggggagggttcatttttattttttaaatta 4437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 56135964 - 56135908
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatta 100  Q
    |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  56135964 gggtgtgtttggatggagggtttaggaggggagggcttacttttcttttttaaatta 56135908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 34995244 - 34995189
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaa 137  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  34995244 acttttcttttttaaattacggatattatcaaatgatttttagaaaattgaattaa 34995189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 9030396 - 9030328
Alignment:
Q  97 attacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    ||||| |||||||||||||||||||||||||||| |||||| || |||||  ||||| |||||||||||    
T  9030396 attacagacattataaaatgatttttagaaaatttaattaataaaatgataaatgattatataatactt 9030328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 41227494 - 41227566
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||||||||||||| ||||||||||||||| |||||| |||| | |||||||||||| | ||| |||||||||    
T  41227494 gggtgtgtttggatggagggtttaggagggcagggcttacttctcttttttaaattatgaacaatataaaatg 41227566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 35543320 - 35543411
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaa 137  Q
    |||||||| ||| ||||||||| || |||||  || | |||| |||||||||||| | |||||||||||| ||||||| |||||||||||||    
T  35543320 gtgtgtttagatggagggtttaagaagggagaacttatttttcttttttaaattaggaacattataaaataatttttaaaaaattgaattaa 35543411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 14539465 - 14539383
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||| ||||||||| ||||||||||||| || |||||||||| |||||| ||||| ||  ||||| ||||||||||||    
T  14539465 tttttttttataaattacgaacattataaaatgtttgttagaaaattaaattaagaacataataaatgatcatataatacttc 14539383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 55510356 - 55510281
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||  ||||| ||||||||||||    
T  55510356 tttttaaattacgaacactataaaat-attttaaaaaaattgaaataacaacatgatgaatgatcatataatacttc 55510281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 6938456 - 6938401
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    ||||||||||| ||||||||  ||||||||||||||| ||||||||||| ||||||    
T  6938456 ggaggggagggttcacttttcatttttaaattacggatattataaaatgtttttta 6938401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 34111037 - 34110979
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||| ||| |||||||||||||||||||| | ||||||  |||||||||||||    
T  34111037 gggtgtgtttagatggagggtttaggaggggagggtttactttttatttttaaattacg 34110979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 46007715 - 46007773
Alignment:
Q  49 tgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacat 107  Q
    ||||||||| |||||||||||||||||||| | ||||||  |||||||||||| |||||    
T  46007715 tgtttggatggagggtttaggaggggagggtttacttttcatttttaaattaccgacat 46007773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 27775584 - 27775661
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggg-----agggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||| ||||||||||||||||||||||||||     |||||| |||||| |||| ||||||||||| | |||||||||    
T  27775584 gggtttgtttggattgagggtttaggaggggaagaaagggcttacttttcttttctaaattacggataatataaaatg 27775661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 41174357 - 41174417
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggac 105  Q
    |||||||||||||||||||||||||||||||| |||| |  ||| |||||||||||| ||||    
T  41174357 gggtgtgtttggattgagggtttaggaggggatggctta-atttcttttttaaattagggac 41174417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 51075268 - 51075215
Alignment:
Q  106 attataaaatgatttttagaaaattgaattaacaacatgattgatgatgatata 159  Q
    |||||||||| ||||||| ||||||||||||||||||||||  ||||| |||||    
T  51075268 attataaaataatttttaaaaaattgaattaacaacatgataaatgatcatata 51075215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 1968602 - 1968571
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  1968602 gggtgtgtttggattgagggtttaggagggga 1968571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 26166938 - 26166969
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  26166938 gggtgtgtttggattgagggtttaggagggga 26166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 37711139 - 37711170
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  37711139 gggtgtgtttggattgagggtttaggagggga 37711170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 43961444 - 43961499
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||| ||||||||||||||||||||||||||||| | ||| | ||||||| |||||    
T  43961444 aggaagggagggctcacttttattttttaaattatgaacaatgtaaaatgtttttt 43961499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 45741891 - 45741922
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  45741891 gggtgtgtttggattgagggtttaggagggga 45741922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 49735469 - 49735500
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  49735469 gggtgtgtttggattgagggtttaggagggga 49735500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 49735735 - 49735704
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  49735735 gggtgtgtttggattgagggtttaggagggga 49735704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 51074375 - 51074430
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||| ||||||||||||||||||||||||||||| | ||||| |||| || |||||    
T  51074375 aggacgggagggctcacttttattttttaaattatgaacattgtaaagtgtttttt 51074430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 54320677 - 54320646
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  54320677 gggtgtgtttggattgagggtttaggagggga 54320646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 54935068 - 54935099
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  54935068 gggtgtgtttggattgagggtttaggagggga 54935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 56135750 - 56135781
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  56135750 gggtgtgtttggattgagggtttaggagggga 56135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 44145808 - 44145842
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||| ||||||||||||||||||||||||    
T  44145808 ggaggggaggactcacttttattttttaaattacg 44145842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 56135784 - 56135838
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||| ||| ||||||||||||||||||| ||| | ||||||| |||||    
T  56135784 ggaggggagggttcatttttattttttaaattacgaacaatgtaaaatgtttttt 56135838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 23813112 - 23813189
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttt 121  Q
    |||| ||| ||||| |||||||| ||||| |||| || ||||||  || |||||||||||||| ||||||||| ||||    
T  23813112 gggtatgtatggatggagggttttggaggagaggacttacttttcattgttaaattacggacactataaaatgttttt 23813189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 46007942 - 46007913
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  46007942 gtgtgtttggattgagggtttaggagggga 46007913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 54320436 - 54320465
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggg 73  Q
    ||||||||||||||||||||||||||||||    
T  54320436 gggtgtgtttggattgagggtttaggaggg 54320465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 2247842 - 2247886
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||    
T  2247842 gggagggttcatttttcatttttaaattacggacattataaaatg 2247886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 47433719 - 47433819
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga-gggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaaca 142  Q
    ||||| |||| ||| ||||||||||||||||| ||| | | ||||  ||||||||||| |||||||||  |||| |||||| |||||| || ||| ||||    
T  47433719 gggtgcgtttagatggagggtttaggaggggaagggtttaattttcgtttttaaattatggacattatggaatgttttttaaaaaattaaaataataaca 47433818  T
Q  143 t 143  Q
    |    
T  47433819 t 47433819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 40858800 - 40858676
Alignment:
Q  42 atgggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaac 141  Q
    |||||||||||||||| |||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  40858800 atgggtgtgtttggatggagggtttaggaggggagggtttagttttcttttttaaattacggacattataaaatgatcttttgaaaattgaattaacaac 40858701  T
Q  142 atgattgatgatgatataatacttc 166  Q
    |||||  ||||| ||||||||||||    
T  40858700 atgataaatgatcatataatacttc 40858676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 42772265 - 42772143
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    ||||||||||| || ||||||||||||||||| || | |||||  || || |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42772265 gggtgtgtttgaatggagggtttaggaggggaaggtttactttgcttcttaaaattacggacattataaaatgattttttgaaaattgaattaacaacat 42772166  T
Q  144 gattgatgatgatataatacttc 166  Q
    |||  ||||| ||||||||||||    
T  42772165 gataaatgatcatataatacttc 42772143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 34641199 - 34641103
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  ||||| ||||||||||||    
T  34641199 ggaggggagggcttacttttcttttttaaattacggacattataaaatga--tttagaaaattgaattaacaacatgataaatgatcatataatacttc 34641103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 41414312 - 41414189
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttatttttt-aaattacggacattataaaatgatttttagaaaattgaattaacaaca 142  Q
    |||||||||||||| | |||||||||||||||| | | |||||| |||||| |||| | ||||||||||||||||||||||||||||||| |||||||||    
T  41414312 gggtgtgtttggatggtgggtttaggaggggagtgtttacttttctttttttaaatcagggacattataaaatgatttttagaaaattgagttaacaaca 41414213  T
Q  143 tgattgatgatgatataatacttc 166  Q
    ||||  ||||| ||||||||||||    
T  41414212 tgataaatgatcatataatacttc 41414189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 48683847 - 48683747
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcactttta-ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaaca 142  Q
    |||||||||||||| |||||||||||||||||||| | | ||||  |||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  48683847 gggtgtgtttggatagagggtttaggaggggagggtttattttttcttttttaaattacgaacattataaaatgatttttaggaaattgaattaacaaca 48683748  T
Q  143 t 143  Q
    |    
T  48683747 t 48683747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 54985706 - 54985806
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 145  Q
    ||||||||||||||||||||||| ||| ||| ||| | ||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  54985706 gtgtgtttggattgagggtttagaaggagagagcttagttttcgtttttaaattacggacattataaattgatttttagaaaattgaattaacaatatga 54985805  T
Q  146 t 146  Q
    |    
T  54985806 t 54985806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 34641003 - 34641081
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||    
T  34641003 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgaacaatgtaaaaggattttt 34641081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 44412570 - 44412472
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||  || || ||||||||||||    
T  44412570 ggaggggaggactcacttttattttttaaattacgaacaatgtaaaatgattttttgaaaattgaattaacaacatgataaatcatcatataatacttc 44412472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 24253917 - 24253833
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||| |||||| |||||    
T  24253917 acttttcttttttaaattacggacattataaaatgagttttagaaagttgaattaacaacatgataaatgattatataacacttc 24253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 26136006 - 26135908
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||||| | |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||  || || ||||||||||||    
T  26136006 ggagtggagggtttacttttcttttttaaattacggacattataaaataattttttgaaaattgaattaacaatatgataaataattatataatacttc 26135908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 40858576 - 40858654
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| | ||||||| |||||    
T  40858576 gggtgtgtttggattgagggtctaggatgggagggctcacttttattttttaaattacgaacaatgtaaaatgtttttt 40858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 18086019 - 18086090
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    ||||| ||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  18086019 gggagagcttacttttcttttttaaattacagacattataaaatgttttttagaaaattgaattaacaacat 18086090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 55428574 - 55428492
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatact 164  Q
    |||||| || |||||||||||||||||| || |||||||||||||||||||||||||||| ||||  ||||| ||||||||||    
T  55428574 acttttcttctttaaattacggacattacaagatgatttttagaaaattgaattaacaacgtgataaatgatcatataatact 55428492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 48683625 - 48683701
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| | ||||||| |||||    
T  48683625 gtgtgtttggattgagggtctaggaggggaggactcacttttatttcttaaattacgaacaatgtaaaatgtttttt 48683701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 46978441 - 46978496
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  46978441 tgtgtttggattgagggtttaggaggggagggttcacttttaatttttaaattacg 46978496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 8432297 - 8432392
Alignment:
Q  69 gaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| || |||||| |||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||  || ||  |||||||||||    
T  8432297 gaggggaggacttactttttttttt--aattacagacattataaaatgatttttacaaaattgaattaacaacatgataaataattttataatacttc 8432392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 10943665 - 10943747
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||    
T  10943665 ttttcttttttaaattatagatattataaaatgatttttagaaaattgaattaacaacataataaataattatataatacttc 10943747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 42699845 - 42699761
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaat 129  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||  ||||||||||||| ||| |||||||| ||||||| |||||    
T  42699845 gggtgtttttggatcgagggtttaggaggggaggactcactttttgtttttaaattacgaacaatataaaat-atttttaaaaaat 42699761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 17474255 - 17474319
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||    
T  17474255 acttttcttttttaaattacggacattataaaataattttttaaaaattgaattaacaatatgat 17474319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 42699669 - 42699745
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||| ||| |||||  ||||| ||||||||||||    
T  42699669 tttttaaattatggacattataaaataaattttagaaaattgaattatcaatatgataaatgatcatataatacttc 42699745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 21090129 - 21090204
Alignment:
Q  91 ttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||  || || ||||||||||||    
T  21090129 ttttaaattacagatattataaaacgattttttgaaaattgaattaacaacatgatatattatcatataatacttc 21090204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 30200099 - 30200178
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||||||||||||| |||||||||||||||||||| | | ||||  ||||||||||||||||| ||| ||||| ||||||    
T  30200099 gggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgtttttta 30200178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 36727370 - 36727287
Alignment:
Q  83 cttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||| |||||||||||| |||||||||||| ||||| |||||||| | |||||||||||||  || || ||||||||||||    
T  36727370 cttttatcttttaaattacgaacattataaaataattttaagaaaattaacttaacaacatgataaattatcatataatacttc 36727287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 37102160 - 37102239
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||||||||||||| |||||||||||||||||||| | | ||||  ||||||||||||||||| ||| ||||| ||||||    
T  37102160 gggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgtttttta 37102239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 37102382 - 37102304
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||||||||||||||||||||||||||||||| || | |||| | |||||||||||||||||  ||||| ||| |||||    
T  37102382 gggtgtgtttggattgagggtttaggaggggaaggtttacttatcttttttaaattacggactatataacatgtttttt 37102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 27197734 - 27197781
Alignment:
Q  118 tttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  27197734 tttttagaaaattgaattaacaacatgatagatgatcatataatactt 27197781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 651741 - 651798
Alignment:
Q  44 gggtgtgtttggattgagggtttagga-ggggagggctcacttttattttttaaatta 100  Q
    ||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||    
T  651741 gggtgtgtttggattgagggtttaggagggggagggtttacttttcttttttaaatta 651798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 25179905 - 25179977
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||| ||||||||||||||| || |||||||||| || ||||||  ||||||||||| ||||| |||||||||    
T  25179905 gggtttgtttggattgagggctttggaggggaggacttacttttcatttttaaattatggacactataaaatg 25179977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 46978594 - 46978538
Alignment:
Q  110 taaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||| |||||| |||||||||||||||  ||||| ||||||||||||    
T  46978594 taaaatgatttttataaaatttaattaacaacatgataaatgattatataatacttc 46978538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 220409 - 220487
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||||| ||||||| ||||||||||||||||| || | | ||||  ||||||||||||||||||||| ||||| ||||||    
T  220409 gggtgtatttggatggagggtttaggagggga-ggtttagttttcatttttaaattacggacattatgaaatgtttttta 220487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 2387993 - 2387934
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgg 103  Q
    ||||||||||||||||||||||| ||||||||||| | |||||| |||| ||||| ||||    
T  2387993 gggtgtgtttggattgagggtttgggaggggagggtttacttttcttttctaaatcacgg 2387934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 21774015 - 21773936
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    ||||||||||||||  ||||||||||||||||||| | ||||||  ||||||||||||| ||| ||  ||||| ||||||    
T  21774015 gggtgtgtttggatgaagggtttaggaggggagggtttactttttatttttaaattacgaacactaggaaatgtttttta 21773936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 49815433 - 49815490
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    |||| |||| |||| |||||||| ||||||||||||| |||||| |||||||||||||    
T  49815433 gggtatgttgggatggagggttttggaggggagggcttacttttcttttttaaattac 49815490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 41414113 - 41414145
Alignment:
Q  68 ggaggggagggctcacttttattttttaaatta 100  Q
    |||||||||||||||||||||||||||||||||    
T  41414113 ggaggggagggctcacttttattttttaaatta 41414145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 8432489 - 8432434
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||||||||||||||||||  ||||| ||| ||||| |||||||| ||||    
T  8432489 tgtgtttggattgagggtttaggagacgagggttcaattttaatttttaaactacg 8432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 46556160 - 46556211
Alignment:
Q  50 gtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    ||||||||||||||||||||||||||| | | | |||| |||||||||||||    
T  46556160 gtttggattgagggtttaggaggggagagtttaattttcttttttaaattac 46556211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 9312708 - 9312678
Alignment:
Q  48 gtgtttggattgagggtttaggaggggaggg 78  Q
    |||||||||||||||||||||||||||||||    
T  9312708 gtgtttggattgagggtttaggaggggaggg 9312678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 45663197 - 45663277
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||||||||| ||| ||| |||||||| |||||| |||||||||| ||||||||||||  |||||  |||||||||||    
T  45663197 tttttttttttaaat-acgaacactataaaat-attttttgaaaattgaaataacaacatgataaatgatcttataatacttc 45663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 24253722 - 24253751
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggg 73  Q
    ||||||||||||||||||||||||||||||    
T  24253722 gggtgtgtttggattgagggtttaggaggg 24253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 42772079 - 42772112
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattac 101  Q
    |||||||||| |||||||||||||||||||||||    
T  42772079 ggaggggaggactcacttttattttttaaattac 42772112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 55428619 - 55428591
Alignment:
Q  47 tgtgtttggattgagggtttaggagggga 75  Q
    |||||||||||||||||||||||||||||    
T  55428619 tgtgtttggattgagggtttaggagggga 55428591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 35513006 - 35512909
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  35513006 ggaggggagggcttacttttattttttaaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 35512909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 47071284 - 47071182
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    ||||||||||||||  ||||||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47071284 gggtgtgtttggatgaagggtttaggaagggaagactaacttttcttttttaaattacggacattataaaatgatttttagaaaatttaattaacaacat 47071185  T
Q  144 gat 146  Q
    |||    
T  47071184 gat 47071182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 51303419 - 51303517
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||||||||||||||||| |||||  ||| | |||||||||||||  ||||||||||||||||||||||  ||||| ||||||||||||    
T  51303419 ggaggggagggctcacttttattttttatattaccaacaatgtaaaatgatttttttaaaattgaattaacaacatgataaatgatcatataatacttc 51303517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 1085524 - 1085623
Alignment:
Q  68 ggaggggagggctcactttta-ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| || ||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||  ||||| ||||||||||||    
T  1085524 ggaggggaggacttacttttccttttttaaattacggacattagaaaatgatttttagaaaattgaactaacagcatgataaatgatcatataatacttc 1085623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 1344778 - 1344679
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||| |||||||||||||||||    | | |||| |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  1344778 tgtgtttggatggagggtttaggaggggaaaatttatttttcttttttaaattacggacattgtaaaatgatttttagaaaattgaaccaacaacatgat 1344679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 25268472 - 25268375
Alignment:
Q  69 gaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| | |||||  |||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||  ||||| ||||||||||||    
T  25268472 gaggggagggtttactttccttttttaaattacggaaattataaaatgatttttagaaaatttaatcaacaacgtgataaatgatcatataatacttc 25268375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 33643499 - 33643379
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatg 144  Q
    ||||||||||||| ||||||||||||||||||   | | |||  |||||||||||| | ||||| |||||||||||||||||||||||||||| || |||    
T  33643499 ggtgtgtttggatagagggtttaggaggggagaatttaatttc-ttttttaaattatgaacattttaaaatgatttttagaaaattgaattaataatatg 33643401  T
Q  145 attgatgatgatataatacttc 166  Q
    ||  ||||| ||||||||||||    
T  33643400 atgaatgatcatataatacttc 33643379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 13386968 - 13387049
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatac 163  Q
    |||||| |||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||||  ||||| |||||||||    
T  13386968 acttttctttttttaattatggacatcataaaacgatttttagaaaattgaattaacaacatgataaatgatcatataatac 13387049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 525116 - 525232
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||||||||   || ||||||||||||||  | |||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||    
T  525116 tgtgtttggatgatggatttaggaggggaggatt-acttttcttttttaaattacggacat-ataaaataatttttagaaa-ttgaattaacaatatgat 525212  T
Q  147 tgatgatgatataatacttc 166  Q
      ||||| ||||||||||||    
T  525213 aaatgattatataatacttc 525232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 40709327 - 40709425
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| ||||| || |||||| |||||||||||||| | |||||||||| |||||||||||||| ||||||| | |||||  ||||| ||||||||||||    
T  40709327 ggagaggaggacttacttttcttttttaaattacgaatattataaaataatttttagaaaattaaattaacgatatgataaatgatcatataatacttc 40709425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 35928007 - 35927924
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| ||||||||||||| ||  ||||||||| ||||| ||||||||||||||||||||||||  ||||| ||||||||||||    
T  35928007 acttttcttttttaaattacagattttataaaataatttt-agaaaattgaattaacaacatgataaatgatcatataatacttc 35927924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 2506553 - 2506628
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||  || ||||||||| |||||    
T  2506553 tgtgtttggattgagggtttagaaggggagggttcatttttatcttttaaattacgaccaatataaaatgtttttt 2506628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 8529810 - 8529867
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  8529810 gggtgcgtttggattgagggtttaggaggggagggtttacttttcttttttaaattac 8529867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 40287490 - 40287433
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||    
T  40287490 ggtgtgtttggatggaggatttaggaggggagagctcacttttattttttaaactacg 40287433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 26941076 - 26941016
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgga 104  Q
    |||||||||||||||||||||||||||||||| || ||| |||| ||||||||| ||||||    
T  26941076 gggtgtgtttggattgagggtttaggaggggaaggttcaattttcttttttaaaatacgga 26941016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 1344563 - 1344617
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1344563 gtgtgtttagattgagggtttaggaaggg-gggctcacttttattttttaaattac 1344617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 2506732 - 2506650
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| ||||||||||||| || |||||||||| ||||||| ||||| |||||||||| || ||  ||||| ||||||||||||    
T  2506732 ttttcttttttaaattacagatattataaaataatttttaaaaaatcgaattaacaatataataaatgatcatataatacttc 2506650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 20607224 - 20607285
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga-----gggctcacttttattttttaaatta 100  Q
    ||||||||||| ||||||||||||||||||||     |||||||||||||||||||||||||    
T  20607224 gggtgtgtttgaattgagggtttaggaggggaagggagggctcacttttattttttaaatta 20607285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 40287312 - 40287388
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||| ||||||| | |||||| |||||||||||||||||||||| || ||  ||||| ||||||||||||    
T  40287312 ttttttaaatta-ggacattgtgaaatgagttttagaaaattgaattaacaaaatcataaatgattatataatacttc 40287388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 20607426 - 20607354
Alignment:
Q  68 ggaggggagggctcact-tttattttttaaattacggacattataaaatgatttttagaaaattgaattaaca 139  Q
    ||||||||||| | ||| ||| |||||| ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  20607426 ggaggggagggtttactatttttttttttaattatggacattataaaatgattttttgaaaattaaattaaca 20607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 2470966 - 2470912
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatta 100  Q
    ||||||||||||||| |||||||||||||| || | |||||| ||||||||||||    
T  2470966 gtgtgtttggattgatggtttaggaggggaaggtttacttttcttttttaaatta 2470912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 50744511 - 50744453
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggac 105  Q
    |||| ||||||||||||||||||||||||||| |   |||| |||||||||||||||||    
T  50744511 tgtgcttggattgagggtttaggaggggagggtttgtttttcttttttaaattacggac 50744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 41676516 - 41676436
Alignment:
Q  47 tgtgtttggattgagggtttagga-----ggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||| ||||||||||||     |||||||| | ||||||  ||||||||||||||||| ||||||||| |||||    
T  41676516 tgtgtttggatcgagggtttaggaagagaggggagggtttacttttcatttttaaattacggacactataaaatgtttttt 41676436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 52707840 - 52707756
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||||  ||||||| |||| ||||||  |||| |  | ||||||||||||  ||||||||||||||||||    
T  52707840 acttttcttttttaaattaccaacattatcaaataatttttttaaaaatttaataacaacatgataaatgatgatataatacttc 52707756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 12234011 - 12234042
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  12234011 gggtgtgtttggattgagggtttaggagggga 12234042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 26324015 - 26324046
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  26324015 gggtgtgtttggattgagggtttaggagggga 26324046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 30010333 - 30010364
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  30010333 gggtgtgtttggattgagggtttaggagggga 30010364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 41498405 - 41498436
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  41498405 gggtgtgtttggattgagggtttaggagggga 41498436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 2859141 - 2859104
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggac 105  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2859141 ggaggggagggtttacttttattttttaaattacggac 2859104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 35927849 - 35927881
Alignment:
Q  68 ggaggggagggctcacttttattttttaaatta 100  Q
    |||||||||||||||| ||||||||||||||||    
T  35927849 ggaggggagggctcacatttattttttaaatta 35927881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 12022178 - 12022276
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  12022178 ggaggggagggcttacttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttc 12022276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 20472703 - 20472825
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||||||| ||||| ||| ||||| |||||| |||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||    
T  20472703 gggtgtgtttggatagagggattaagagggaagggcttacttttcttttttaaattacagacattataaaataaattttagaaaattgaattaacaatat 20472802  T
Q  144 gattgatgatgatataatacttc 166  Q
    |||  ||||| ||||||||||||    
T  20472803 gatatatgatcatataatacttc 20472825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 43732896 - 43732798
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  43732896 ggaggggagggtttacttttcttttttaaattacggacattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttc 43732798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 8815190 - 8815274
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| ||||||||||||    
T  8815190 acttttcttttttaaattacggacattataaaatgatttttagaaaattgaatcaacaacatgataaatgattatataatacttc 8815274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 16024341 - 16024265
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  16024341 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttc 16024265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 30365339 - 30365241
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||  ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||| |||||    
T  30365339 ggaggggagggcttccttttcttttttaaattacagacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttc 30365241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 29937697 - 29937614
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  29937697 acttttctttttaaaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 29937614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 9933474 - 9933356
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||| ||||||||| |||  ||||||||||||||| | |||||| ||||||||| |  |||||||||||||||||||| | |||||||||||||||||||    
T  9933474 gggtatgtttggatggagaatttaggaggggagggtttacttttcttttttaaaatttggacattataaaatgattttaaaaaaattgaattaacaacat 9933375  T
Q  144 gattgatgatgatataata 162  Q
    |||  ||||| ||||||||    
T  9933374 gataaatgatcatataata 9933356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 34196514 - 34196420
Alignment:
Q  71 ggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||  | ||| ||||||||||||    
T  34196514 ggggagggcttacttttcttttt-aaattacagacattataaaatgatttttagaaaattgaattaacaacaagataaacgatcatataatacttc 34196420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 8671849 - 8671904
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8671849 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaatatga 8671904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 40633047 - 40633102
Alignment:
Q  91 ttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40633047 ttttaaattacggacattataaaataatttttagaaaattgaattaacaacatgat 40633102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 39449513 - 39449415
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| || ||  |||||||| |||  ||| ||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  39449513 ggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaattaacaacatgattaatgatcatataatacttc 39449415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 9718490 - 9718569
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||  ||||||||||||||||| ||| ||||| ||||||    
T  9718490 gggtgtgtttggatggagggtttaggaggggagggttcgattttcatttttaaattacggacactatgaaatggttttta 9718569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 12022353 - 12022298
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||    
T  12022353 aggaggggagggctcacttttattttttaaattacggacaatgtaaaatgtttttt 12022298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 39449315 - 39449373
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||    
T  39449315 gggtgtggttgaattgagggtttaggagaggagagctcacttttattttttaaattacg 39449373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 6453371 - 6453315
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||    
T  6453371 tttttaaattacaatcattataaaatgatttttagaaaattgaattaataacatgat 6453315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 9434360 - 9434432
Alignment:
Q  95 aaattacggacattataaaa-tgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| ||||||||| | ||||||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  9434360 aaattacggatattataaaaataatttttaaaaaattgaattaacaacatgataaatgataatataatacttc 9434432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 16652959 - 16653021
Alignment:
Q  44 gggtgtgtttggattgagggtttagga-ggggagggctcacttttattttttaaattacggac 105  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||| |||||||||||||||||    
T  16652959 gggtgtgtttggattgagggttttggagggggagggtttacttttcttttttaaattacggac 16653021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 43826500 - 43826443
Alignment:
Q  109 ataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||| ||| ||||||||    
T  43826500 ataaaataatttttagaaaattgaattaacaacatgataaatgatcataaaatacttc 43826443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 1026863 - 1026931
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    ||||||||||| |||||||||||||||||||| | ||||||  |||||||||| |||||| ||| ||||    
T  1026863 tgtgtttggatggagggtttaggaggggagggtttacttttcatttttaaattgcggacactatgaaat 1026931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 29358354 - 29358422
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    ||||||||||| |||||||||||||| || || | ||||||  ||||||||||||||||| ||||||||    
T  29358354 tgtgtttggatggagggtttaggaggagaaggtttactttttatttttaaattacggacactataaaat 29358422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 2248685 - 2248614
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    |||||||||||||||||| |    ||||||||||| ||||||||  ||||||||||||||||| ||| ||||    
T  2248685 gggtgtgtttggattgagaggaagggaggggagggttcactttttatttttaaattacggacactatgaaat 2248614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 12022386 - 12022355
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  12022386 gggtgtgtttggattgagggtttaggagggga 12022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 43732680 - 43732711
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  43732680 gggtgtgtttggattgagggtttaggagggga 43732711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 7502965 - 7502999
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggaggg 78  Q
    ||||||||||||||||||||||| |||||||||||    
T  7502965 gggtgtgtttggattgagggtttgggaggggaggg 7502999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 8815350 - 8815296
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||| ||||||||| ||||||||||||| ||| | ||||||| |||||    
T  8815350 ggaggggagggttcacttttaatttttaaattacgaacactgtaaaatgtttttt 8815296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 74
Target Start/End: Complemental strand, 8815384 - 8815354
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggg 74  Q
    |||||||||||||||||||||||||||||||    
T  8815384 gggtgtgtttggattgagggtttaggagggg 8815354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 16024188 - 16024242
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||| ||||| ||||  ||||||||||||| ||| |||||||||||||||    
T  16024188 ggaggggagagctcagtttttgtttttaaattacgaacaatataaaatgattttt 16024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 30582022 - 30581985
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggac 105  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  30582022 ggaggggagggcttacttttcttttttaaattacggac 30581985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 35694742 - 35694819
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||| ||||| |||||||||||||||||||||   | | ||||  |||||||||||| || ||||||||||| |||||    
T  35694742 ggtgcgtttgaattgagggtttaggaggggagaatttagttttcatttttaaattacagatattataaaatgtttttt 35694819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 36166284 - 36166251
Alignment:
Q  82 acttttattttttaaattacggacattataaaat 115  Q
    ||||||||||| ||||||||||||||||||||||    
T  36166284 acttttattttataaattacggacattataaaat 36166251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 36308853 - 36308906
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaa 97  Q
    ||||||||||||||| ||||||| ||||||||||| ||| |||| ||| |||||    
T  36308853 gggtgtgtttggattaagggtttgggaggggagggttcatttttctttgttaaa 36308906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 2412967 - 2412999
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggaggg 78  Q
    |||||||||||| ||||||||||||||||||||    
T  2412967 gtgtgtttggatggagggtttaggaggggaggg 2412999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 6315067 - 6315095
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  6315067 gggtgtgtttggattgagggtttaggagg 6315095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 7394701 - 7394673
Alignment:
Q  47 tgtgtttggattgagggtttaggagggga 75  Q
    |||||||||||||||||||||||||||||    
T  7394701 tgtgtttggattgagggtttaggagggga 7394673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 9718722 - 9718694
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  9718722 gggtgtgtttggattgagggtttaggagg 9718694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 11785537 - 11785593
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatta 100  Q
    ||||||||||| |||  |||||||||||||||| | | |||||| ||||||||||||    
T  11785537 gggtgtgtttgaattccgggtttaggaggggagagtttacttttcttttttaaatta 11785593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 30365131 - 30365159
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  30365131 gggtgtgtttggattgagggtttaggagg 30365159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 242425 - 242331
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataata 162  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||||||    
T  242425 ggaggggagggtttacttttcttttttaaattacggacattataaaatgatttttaaaaaattgaattaacgacatgataaatgatgatataata 242331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 33265838 - 33265717
Alignment:
Q  46 gtgtgtttggattgagggtttagga-ggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatg 144  Q
    |||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||| | ||| | ||||||||||||| ||||||||||||||||| |||    
T  33265838 gtgtatttggattgagggtttaggaaggggaggactcgcttttattttttaaattatgaacaatgtaaaatgattttttgaaaattgaattaacaatatg 33265739  T
Q  145 attgatgatgatataatacttc 166  Q
    ||  ||||| ||||||||||||    
T  33265738 ataaatgatcatataatacttc 33265717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 15085734 - 15085833
Alignment:
Q  68 ggaggggagggctcacttttattttttaaa-ttacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||| |||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||    
T  15085734 ggagaggagagcttactttttttttttaaaattacggacattataaaatgatttttagaaaattgaattaacaacttgataaatgatcatataatacttc 15085833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 22356213 - 22356133
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacatt-ataaaatgatttttagaaaattgaattaacaacatgatt 147  Q
    ||||||||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22356213 ggaggggagggttcatttttcttttttaaattacggacatttataaaatgatttttagaaaattgaattaacaaaatgatt 22356133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 42813828 - 42813732
Alignment:
Q  69 gaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    ||||||| |||| | |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  || || |||||||||||    
T  42813828 gaggggatggcttatttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacctgataaataatcatataatactt 42813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 45257502 - 45257418
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  45257502 acttttcttttttaaattacggatattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttc 45257418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 36052105 - 36052220
Alignment:
Q  51 tttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgat 150  Q
    ||||||| |||  |||||||||||| | || |||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||  ||    
T  36052105 tttggatggagaatttaggaggggacgacttacttttctattttaaattacatacattataaaatgatttttagaaaattgaattaacaacatcatacat 36052204  T
Q  151 gatgatataatacttc 166  Q
    ||| |||| |||||||    
T  36052205 gatcatatgatacttc 36052220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 34187812 - 34187695
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaa--ttacggacattataaaatgatttttagaaaattgaattaacaac 141  Q
    |||||| |||| || ||||||||||||| |||||||| | |||| ||||  |||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34187812 gggtgtatttgaatggagggtttaggagtggagggcttattttttttttaaaaaaattatggacattataaaatgatttttagaaaattgaattaacaac 34187713  T
Q  142 atgattgatgatgatata 159  Q
    |||||  ||||| |||||    
T  34187712 atgataaatgattatata 34187695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 2381060 - 2381120
Alignment:
Q  106 attataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2381060 attataaaatgaattttagaaaattgaattgacaacatgattgatgatgatataatacttc 2381120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 3094409 - 3094486
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||  || || ||||||||||||    
T  3094409 ttttttaaattacgaacgttataaaatgattcttagaaaattgaattaacaacatgataaataatcatataatacttc 3094486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 42296352 - 42296432
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataata 162  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||  ||||| ||||||||    
T  42296352 acttttcttttttaaattacggatattataaaatgaattttagaaaaatgaattaacaacataataaatgatcatataata 42296432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1583310 - 1583231
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||| ||| ||||| ||||||    
T  1583310 gggtttgtttggatggagggtttaggaggggagggttcacttttcatttttaaattacggacactatgaaatgtttttta 1583231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 45098355 - 45098280
Alignment:
Q  91 ttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||  ||||| ||||||||||||    
T  45098355 ttttaaattacagacattataaaatggtttttgaaaaattgaattaacaacatgataaatgatcatataatacttc 45098280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 9313188 - 9313118
Alignment:
Q  76 gggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||| ||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  9313188 gggcttacttttcctttttaaattacagacattataaaatgatttttcgaaaattgaattaacaacttgat 9313118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 14196897 - 14196823
Alignment:
Q  49 tgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    |||||||||||||||||  ||||||||||||| |||||| |||||||||||||| ||| ||||||||| ||||||    
T  14196897 tgtttggattgagggttctggaggggagggcttacttttcttttttaaattacgaacactataaaatgtttttta 14196823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 31061547 - 31061474
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataata 162  Q
    ||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||  ||||| ||||||||    
T  31061547 ttttttaaattacagacattataaagtgactttttgaaaattgaattaacaacatgataaatgatcatataata 31061474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 35325456 - 35325380
Alignment:
Q  90 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||  ||||||||||||| ||||||| ||||||||||||| ||||||||  ||||| ||||||||||||    
T  35325456 tttttaaattaacgacattataaaataatttttaaaaaattgaattaataacatgataaatgatcatataatacttc 35325380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 39821902 - 39821831
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    |||||||||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||| ||||    
T  39821902 gggtgtgtttggatggagggtttaggaggggagggtttagttttcttttttaaattacggacactatgaaat 39821831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 21502266 - 21502144
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||| ||| ||  |||||||||| |||| |  | |||| ||||||||| |||||| |||||||||| ||||| ||||||||| ||||||||||     
T  21502266 gggtgtgtttagatggaaagtttaggaggagaggacatagttttcttttttaaactacggatattataaaataattttaagaaaattgcattaacaacaa 21502167  T
Q  144 gattgatgatgatataatacttc 166  Q
    |||  ||| | ||||||||||||    
T  21502166 gataaatggtcatataatacttc 21502144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 22355976 - 22356054
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||||||||||||||||||||||| ||||||| |  ||| ||||||||||||||||||| ||| | ||||||| |||||    
T  22355976 gggtgtgtttggattgagggtttaagaggggatgattcatttttattttttaaattacgaacaatgtaaaatgtttttt 22356054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 1052811 - 1052868
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||    
T  1052811 ttttttaaattatcgatattataaaataatttttagaaaattgaattaacaacatgat 1052868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 1270487 - 1270433
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||    
T  1270487 ggaggggagggctcacttttattttttaaattacgaacaatgtaaaatgtttttt 1270433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 8554355 - 8554412
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||| ||||||||||||||||||||| ||||||  ||||||||||||||| ||||||    
T  8554355 tttttcaaattacggacattataaaataattttttaaaaattgaattaacatcatgat 8554412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 16713718 - 16713657
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 145  Q
    |||| ||||| ||| |||||| |||||||||| ||||||||||||||||||||| |||||||    
T  16713718 ttttctttttaaaactacggatattataaaataatttttagaaaattgaattaataacatga 16713657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 23748106 - 23748167
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggac 105  Q
    |||||||||||||| |||||||||||||||||||| | | |||| ||||||||| |||||||    
T  23748106 gggtgtgtttggatcgagggtttaggaggggagggtttagttttcttttttaaactacggac 23748167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 14187092 - 14187162
Alignment:
Q  51 tttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttt 121  Q
    |||||||||| ||||| | ||||||||||| |||||| ||||||||||||   ||||||||||||| ||||    
T  14187092 tttggattgaaggttttgaaggggagggcttacttttcttttttaaattataaacattataaaatgttttt 14187162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 39732742 - 39732812
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||||||| ||| || ||||||||||||||||| | ||||||  ||||||||||||| ||||||| |||||    
T  39732742 gtgtgtttagatggaaggtttaggaggggagggtttacttttcatttttaaattacgaacattatgaaatg 39732812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 12541773 - 12541847
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggaggg----ctc-acttttattttttaaattacggacattataaaat 115  Q
    |||||||||||||||||||||||||||||||||     || |||||| |||||||||||||||||  ||||||||    
T  12541773 gtgtgtttggattgagggtttaggaggggaggggagagtctacttttcttttttaaattacggactatataaaat 12541847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 15085906 - 15085849
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaat 129  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||  |||||| |||||    
T  15085906 gggagggctcgcttttattttttaaattacgaacaatataaaatattttttaaaaaat 15085849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 31061393 - 31061442
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||| ||||||||||||||||||||||||||||||| ||| | |||||||    
T  31061393 aggatgggagggctcacttttattttttaaattacgaacaatgtaaaatg 31061442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 31928121 - 31928177
Alignment:
Q  110 taaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||  ||||||||||||| ||||||||  ||||| ||||||||||||    
T  31928121 taaaatgatttttttaaaattgaattaataacatgataaatgatcatataatacttc 31928177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 1052966 - 1052911
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||| |||| ||||||||||||||||||||||||| ||| | ||||||| |||||    
T  1052966 aggagaggagagctcacttttattttttaaattacgaacaatgtaaaatgtttttt 1052911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 17379847 - 17379878
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  17379847 gggtgtgtttggattgagggtttaggagggga 17379878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 17380084 - 17380053
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  17380084 gggtgtgtttggattgagggtttaggagggga 17380053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 35736176 - 35736207
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  35736176 gggtgtgtttggattgagggtttaggagggga 35736207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 36347784 - 36347753
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  36347784 gggtgtgtttggattgagggtttaggagggga 36347753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 2381196 - 2381142
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||| | ||||||||||||||||||||||| ||| | ||||||| |||||    
T  2381196 ggaggggagagttcacttttattttttaaattacgaacaatgtaaaatgtttttt 2381142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 31795804 - 31795902
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| || ||||||  ||||||||||||||||| ||| ||| | |||||  |||| | || ||||||||||||  | ||| ||||||||||||    
T  31795804 ggaggggaggacttacttttcgtttttaaattacggacactatgaaaagtttttttaaaaaataaaataacaacatgataaacgatcatataatacttc 31795902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 35736396 - 35736335
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaat 129  Q
    ||||||||||||||||||||  |||||||||| |||||| ||| ||| | |||||| |||||    
T  35736396 ggaggggagggctcacttttcgtttttaaatttcggacactatgaaaagttttttaaaaaat 35736335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 36567093 - 36567064
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  36567093 gtgtgtttggattgagggtttaggagggga 36567064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 40022364 - 40022393
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggg 73  Q
    ||||||||||||||||||||||||||||||    
T  40022364 gggtgtgtttggattgagggtttaggaggg 40022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 19567057 - 19567025
Alignment:
Q  46 gtgtgtttggattgagggtttaggaggggaggg 78  Q
    |||||||||||||||||||||||||| ||||||    
T  19567057 gtgtgtttggattgagggtttaggagaggaggg 19567025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 36046204 - 36046236
Alignment:
Q  43 tgggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||| |||||||||||||||||    
T  36046204 tgggtgtgtttggatggagggtttaggagggga 36046236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 40305671 - 40305798
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga-----gggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaac 138  Q
    |||||||||||||| |||||||||||||||||     ||||| | |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  40305671 gggtgtgtttggatggagggtttaggaggggaagggagggcttagttttcttttttaaattacagacattataaaataatttttagaaaattgaattaac 40305770  T
Q  139 aacatgattgatgatgatataatacttc 166  Q
    || |||||  ||||| ||||| ||||||    
T  40305771 aatatgataaatgatcatatagtacttc 40305798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10043461 - 10043363
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||    
T  10043461 ggaggggaggactcacttttcttttttaaattacgaatattataaaatgatttttagaaaattgaattaacaacattataaataatcatataatacttc 10043363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 34981019 - 34980921
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| || |||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||  ||||| ||||||||||||    
T  34981019 ggaggggaggacttacttttcttttttaaattatggacattataaaatgatttatagaaaattgagttaacaacatgataaatgattatataatacttc 34980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 33744228 - 33744319
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatata 159  Q
    ||||||||||| | |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||||    
T  33744228 ggaggggagggtttacttttcttttttaaattatggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatata 33744319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 6597839 - 6597920
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatac 163  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||  ||||| |||||||||    
T  6597839 acttttcttttttaaattacggacattgtaaaatgattttttgaaaattgaaataacaacatgataaatgatcatataatac 6597920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 8551428 - 8551550
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga-gggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaaca 142  Q
    |||||||||||||| |||||||||  |||| | ||| | || ||||||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||    
T  8551428 gggtgtgtttggatagagggtttaatagggaaagggtttacatttatttcttaaactacagacattataaaatgatttttaaaaaattaaattaacaaca 8551527  T
Q  143 tgattgatgatgatataatactt 165  Q
    | ||  ||||| |||||||||||    
T  8551528 ttataaatgatcatataatactt 8551550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10204785 - 10204687
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||| || |||||| |||||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||  ||||| ||||||||||||    
T  10204785 ggaggggaggacttacttttcttttttaatttacagacattaaaaaatgatttttaaaaaattgaattaacaacgtaataaatgatcatataatacttc 10204687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 5688572 - 5688524
Alignment:
Q  118 tttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688572 tttttagaaaattgaattaacaacatgattgatgatgatataatacttc 5688524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 6382522 - 6382458
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||| |||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6382522 acttttcttttctaatttacggacattataaaatactttttagaaaattgaattaacaacatgat 6382458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 15986659 - 15986734
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||| || | |||| |||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||    
T  15986659 ggaggggaggacttaattttcttttttaatttacagacattataaaatgacttttaaaaaattgaattaacaacat 15986734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 21581135 - 21581078
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||    
T  21581135 ttttttaaattatggacgttatgaaataatttttagaaaattgaattaacaacatgat 21581078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 13839742 - 13839861
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||  ||||||| ||||| |||| ||| |||||| |||||||||||| ||||| |||||||||  ||||  ||| ||||| ||| ||||||||    
T  13839742 tgtgtttggacggagggttgaggagaggagagcttacttttcttttttaaattatggacactataaaatgtattttgaaaagttgaaataataacatgat 13839841  T
Q  147 tgatgatgatataatacttc 166  Q
     ||  || ||||||||||||    
T  13839842 agacaatcatataatacttc 13839861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 29002220 - 29002295
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||| |||||||||||||||||||| | ||||||  ||||||||||| | ||| ||||||||| |||||    
T  29002220 tgtgtttggatggagggtttaggaggggagggtttacttttcatttttaaattatgaacactataaaatgtttttt 29002295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 2183999 - 2183945
Alignment:
Q  92 tttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||||||||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  2183999 tttaaattacggacattataaaatgttatttaaaaaattgaaataacaacatgat 2183945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 9856891 - 9856952
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggac 105  Q
    ||||||||||||||||||||||||||||||||| | | | |||| |||||||||||| ||||    
T  9856891 gggtgtgtttggattgagggtttaggaggggagagtttagttttcttttttaaattaaggac 9856952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 12035987 - 12036067
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    |||| |||||||||||| | |||||||||||| ||| ||||||||||||||| ||||||||||  || || |||||||||||    
T  12035987 ttttcttttttaaattatgaacattataaaattattattagaaaattgaatt-acaacatgataaattatcatataatactt 12036067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 22023602 - 22023517
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggaca-ttataaaatgatttttagaaaa 128  Q
    |||||||||||||| |||||||||||||||||||| | ||||||  ||| ||||||||||| | |||| ||||| |||||| ||||    
T  22023602 gggtgtgtttggatggagggtttaggaggggagggtttacttttcatttataaattacggatatttatgaaatgttttttaaaaaa 22023517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 5688447 - 5688502
Alignment:
Q  67 aggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    |||||||||||| ||||||||||||||||||||||| ||| | ||||||| |||||    
T  5688447 aggaggggagggttcacttttattttttaaattacgaacaatgtaaaatgtttttt 5688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 10043058 - 10043141
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    |||||| ||| ||||||||   |||||| | ||| |||| |||||||||||||||||||||||||  ||||| |||||||||||    
T  10043058 acttttctttcttaaattataaacattaaagaattatttctagaaaattgaattaacaacatgataaatgatcatataatactt 10043141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 15986867 - 15986785
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga----------gggctcacttttattttttaaattacggacattataaaatg 116  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||| | |||||||    
T  15986867 gggtgtgtttggattgagggtttaggaggggaaggaagaggagggctcacttttattttttaaattacgaacaatgtaaaatg 15986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 1658022 - 1657967
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttta 123  Q
    ||||||||||| | ||||||  ||||||||||||||||| ||||||||| ||||||    
T  1658022 ggaggggagggtttacttttcatttttaaattacggacactataaaatgtttttta 1657967  T

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Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 5688633 - 5688602
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  5688633 gggtgtgtttggattgagggtttaggagggga 5688602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 11756882 - 11756913
Alignment:
Q  47 tgtgtttggattgagggtttaggaggggaggg 78  Q
    ||||||||||||||||||||||||||||||||    
T  11756882 tgtgtttggattgagggtttaggaggggaggg 11756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 13634712 - 13634743
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  13634712 gggtgtgtttggattgagggtttaggagggga 13634743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 13634954 - 13634923
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  13634954 gggtgtgtttggattgagggtttaggagggga 13634923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 14245089 - 14245120
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  14245089 gggtgtgtttggattgagggtttaggagggga 14245120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 14245289 - 14245258
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  14245289 gggtgtgtttggattgagggtttaggagggga 14245258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 16938480 - 16938511
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  16938480 gggtgtgtttggattgagggtttaggagggga 16938511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 20147113 - 20147082
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  20147113 gggtgtgtttggattgagggtttaggagggga 20147082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 22022849 - 22022879
Alignment:
Q  45 ggtgtgtttggattgagggtttaggagggga 75  Q
    |||||||||||||||||||||||||||||||    
T  22022849 ggtgtgtttggattgagggtttaggagggga 22022879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 33744402 - 33744368
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacg 102  Q
    |||||||||||||||||||||| ||||||||||||    
T  33744402 ggaggggagggctcacttttatattttaaattacg 33744368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 39965996 - 39966062
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattat 110  Q
    |||||||||| ||| |||||||||||||||||| | | ||||||  ||||||||||| | |||||||    
T  39965996 gggtgtgtttagatagagggtttaggaggggagagtttactttttatttttaaattatgaacattat 39966062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 10204611 - 10204644
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattac 101  Q
    ||||| ||||||||||||||||||||||||||||    
T  10204611 ggaggtgagggctcacttttattttttaaattac 10204644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 14681473 - 14681502
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  14681473 gtgtgtttggattgagggtttaggagggga 14681502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 37551178 - 37551207
Alignment:
Q  48 gtgtttggattgagggtttaggaggggagg 77  Q
    ||||||||||||||||||||||||||||||    
T  37551178 gtgtttggattgagggtttaggaggggagg 37551207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 37654008 - 37654037
Alignment:
Q  48 gtgtttggattgagggtttaggaggggagg 77  Q
    ||||||||||||||||||||||||||||||    
T  37654008 gtgtttggattgagggtttaggaggggagg 37654037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 2550592 - 2550564
Alignment:
Q  47 tgtgtttggattgagggtttaggagggga 75  Q
    |||||||||||||||||||||||||||||    
T  2550592 tgtgtttggattgagggtttaggagggga 2550564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 16502034 - 16502006
Alignment:
Q  45 ggtgtgtttggattgagggtttaggaggg 73  Q
    |||||||||||||||||||||||||||||    
T  16502034 ggtgtgtttggattgagggtttaggaggg 16502006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 19177329 - 19177273
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaatta 100  Q
    |||| |||||||||||||||||| ||||||||||| | | |||| ||||| ||||||    
T  19177329 gggtatgtttggattgagggttttggaggggagggtttagttttctttttcaaatta 19177273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 26414894 - 26414922
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  26414894 gggtgtgtttggattgagggtttaggagg 26414922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 40305908 - 40305880
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  40305908 gggtgtgtttggattgagggtttaggagg 40305880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 9051583 - 9051647
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9051583 actttttttttttaaattacggatattataaaatgatttttagaaaattgaattaacaacatgat 9051647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 4097236 - 4097368
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggc----------tcacttttattttttaaattacggacattataaaatgatttttagaaaattgaa 133  Q
    |||||||||||||||||||||||||||||||| ||           | ||||||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  4097236 gggtgtgtttggattgagggtttaggaggggaaggaagatgagagtttacttttattttttgaatcacggacattataaaatattttttagaaaattgaa 4097335  T
Q  134 ttaacaacatgattgatgatgatataatacttc 166  Q
    |||||||||||||  ||||| ||| ||||||||    
T  4097336 ttaacaacatgataaatgatcatacaatacttc 4097368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 31799116 - 31799032
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||  ||||| ||||||||||||    
T  31799116 acttttcttttttaaattacggatattataaaataattttttaaaaattgaattaacaacatgataaatgatcatataatacttc 31799032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 3841281 - 3841196
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgat--ttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||  ||||||||||||||||||    
T  3841281 acttttcttttttaaattacggacattataaaatgatttttttacaaaattgaattaacaa-atgataaatgatgatataatacttc 3841196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 15323406 - 15323339
Alignment:
Q  96 aattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatac 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||    
T  15323406 aattacggacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatac 15323339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 15353544 - 15353477
Alignment:
Q  96 aattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||    
T  15353544 aattacggacattataaaatgatttttagaaaattgaattaacaacattataaatgatcatataatac 15353477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 26318500 - 26318416
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||| |||  ||||||||||| ||||||||||||||||||||||||||||   |||| ||||||||||||    
T  26318500 acttttcttttttaaattatggattttataaaatgacttttagaaaattgaattaacaacatgataattgatcatataatacttc 26318416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10293457 - 10293359
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| ||| |||||| ||||| ||||||| || ||||||||||||||||||||||| |||||| ||||||| ||  || || ||||||||||||    
T  10293457 ggaggggagagcttacttttctttttcaaattacagatattataaaatgatttttagaaaactgaattgacaacatcataaataatcatataatacttc 10293359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 15373668 - 15373729
Alignment:
Q  102 ggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatac 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||    
T  15373668 ggacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatac 15373729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 25468448 - 25468532
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    |||||| |||||||||||| |||||||||||||| ||||| |||||||| | |||||||| ||||  ||||| ||||||||||||    
T  25468448 acttttcttttttaaattatggacattataaaataattttaagaaaattaatttaacaacgtgataaatgattatataatacttc 25468532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 31849343 - 31849257
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaatt 130  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||||  ||||||||||||||||| |||||||||  ||||| ||||||    
T  31849343 gggtgtgtttagatggagagttcaggaggggagggttcacttttcatttttaaattacggacactataaaatgtcttttaaaaaatt 31849257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 34176606 - 34176700
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataata 162  Q
    |||||||| | || |||||| |||||||||||||| | |||||||| ||||||||| |||||||||||||||| || ||  ||||| ||||||||    
T  34176606 ggaggggaagacttacttttcttttttaaattacgaaaattataaattgatttttaaaaaattgaattaacaatataataaatgatcatataata 34176700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 1300630 - 1300690
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgga 104  Q
    ||||||||||||||||||||||||||||||||||| | |||||   |||||||||||||||    
T  1300630 gggtgtgtttggattgagggtttaggaggggagggtttactttatgtttttaaattacgga 1300690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 21606855 - 21606915
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacgga 104  Q
    |||||||||||||| |||||||||||||||||||| | ||||||  |||||||||||||||    
T  21606855 gggtgtgtttggatggagggtttaggaggggagggtttacttttcatttttaaattacgga 21606915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 10293286 - 10293332
Alignment:
Q  69 gaggggagggctcacttttattttttaaattacggacattataaaat 115  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||    
T  10293286 gaggggagggctcacttttattttttaaattacgaacaatgtaaaat 10293332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 15353365 - 15353458
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggg----------gagggctcacttttattttttaaattacggacattataaaatgatttttagaaa 127  Q
    ||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||||||| ||| | ||||||| ||||| ||||    
T  15353365 gggtgtgtttggattgagggtttaggaggggaagggaggagagcgctcacttttattttttaaattacgaacaatgtaaaatgtttttttgaaa 15353458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 4097479 - 4097419
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggaggg-----ctcacttttattttttaaatt 99  Q
    ||||||||| |||| ||||||||||||||||||||     |||||||||||||||||||||    
T  4097479 gggtgtgttaggatggagggtttaggaggggaggggatgactcacttttattttttaaatt 4097419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 23091030 - 23091078
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatg 116  Q
    |||||||||||||||||||||| |||||||||||| ||| | |||||||    
T  23091030 ggaggggagggctcacttttatcttttaaattacgaacaatctaaaatg 23091078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 28477182 - 28477126
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaa 140  Q
    |||| ||||||||||||| ||||||||||||| ||| |||||||| | |||||||||    
T  28477182 ttttcttttttaaattacagacattataaaataattcttagaaaaataaattaacaa 28477126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 29693079 - 29693023
Alignment:
Q  84 ttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaa 140  Q
    |||| ||||||||||||| ||||||||||||| ||| |||||||| | |||||||||    
T  29693079 ttttcttttttaaattacagacattataaaataattcttagaaaaataaattaacaa 29693023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 5381199 - 5381262
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacat 107  Q
    |||||||||||||| ||| ||||||| | || ||||| | |||| |||||||||||||||||||    
T  5381199 gggtgtgtttggatagagtgtttaggtgaggtgggcttaattttcttttttaaattacggacat 5381262  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 10818230 - 10818261
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  10818230 gggtgtgtttggattgagggtttaggagggga 10818261  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 14515474 - 14515505
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  14515474 gggtgtgtttggattgagggtttaggagggga 14515505  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 15323226 - 15323257
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||||    
T  15323226 gggtgtgtttggattgagggtttaggagggga 15323257  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 10818425 - 10818327
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||| | ||||||  ||||||||||||||||| ||| ||||| |||||| || ||| |  ||  ||||||||  ||||| ||||||||||||    
T  10818425 ggaggggagggtttacttttcatttttaaattacggacactatgaaatgttttttaaaatattaacatattaacatgataaatgatcatataatacttc 10818327  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 9719034 - 9719063
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  9719034 gtgtgtttggattgagggtttaggagggga 9719063  T

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Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 21607085 - 21607056
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  21607085 gtgtgtttggattgagggtttaggagggga 21607056  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 4097722 - 4097678
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataa 112  Q
    |||||| |||| |||||||| |||||||||||||||||| |||||    
T  4097722 ggagggaagggttcacttttcttttttaaattacggacaatataa 4097678  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 9719274 - 9719242
Alignment:
Q  43 tgggtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||| |||||||    
T  9719274 tgggtgtgtttggattgagggtttatgagggga 9719242  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 31798919 - 31798947
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagg 72  Q
    |||||||||||||||||||||||||||||    
T  31798919 gggtgtgtttggattgagggtttaggagg 31798947  T

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Target: scaffold0012 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 184612 - 184690
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||  ||||||||| |||||    
T  184612 gggtgtgtttggattgagggtttaggaggggagggttcacttttattttttaaattatgaactatataaaatgtttttt 184690  T

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Target: scaffold0012; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 184812 - 184718
Alignment:
Q  72 gggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||| | ||| || |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||  || || ||||||||||||    
T  184812 gggagggtttactattcttttttaaattatggacattataaaatgatttttttaaaattgaattaacaacatgatatattatcatataatacttc 184718  T

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Target: scaffold0026 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 1446 - 1529
Alignment:
Q  82 acttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatactt 165  Q
    |||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  1446 acttttcttttttaaactgcggacattatagaatgatttttagaaaattgaattaacaacttgataaatgatcatataatactt 1529  T

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Target: scaffold0026; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 1607 - 1554
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttt 121  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||    
T  1607 ggaggggagggctcacttttattttttaaattacgaacaatgtaaaatgttttt 1554  T

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Target: scaffold0026; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 1175 - 1204
Alignment:
Q  46 gtgtgtttggattgagggtttaggagggga 75  Q
    ||||||||||||||||||||||||||||||    
T  1175 gtgtgtttggattgagggtttaggagggga 1204  T

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Target: scaffold0095 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 8356 - 8258
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||||||| || ||  |||||||| |||  ||| ||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  8356 ggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaattaacaacatgattaatgatcatataatacttc 8258  T

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Target: scaffold0095; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 8158 - 8216
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacg 102  Q
    ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||    
T  8158 gggtgtggttgaattgagggtttaggagaggagagctcacttttattttttaaattacg 8216  T

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Target: scaffold0071 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 53116 - 53000
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacat 143  Q
    |||||||||||||| ||||||||||||||  |  |   |||||| |||||||||||| || |||||| ||||||||||| |||||||||| |||||||||    
T  53116 gggtgtgtttggatggagggtttaggaggacaatgt--acttttcttttttaaattatgggcattatgaaatgattttttgaaaattgaactaacaacat 53019  T
Q  144 gattgatgatgatataata 162  Q
    |||  ||||| ||||||||    
T  53018 gataaatgatcatataata 53000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 52897 - 52954
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattac 101  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||    
T  52897 gggtgtgtttggattgagggtttaggatgggaagactcacttttattttttaaattac 52954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 17781 - 17651
Alignment:
Q  44 gggtgtgtttggattgagggtttaggagggga--------gggctcacttttattttttaaattacggacattataaaatgatttttagaaaattgaatt 135  Q
    |||||||||||||| ||||||||||||| |||        ||| | |||||| |||||||||||||  | ||||||||||||||||| ||||||||||||    
T  17781 gggtgtgtttggatggagggtttaggagtggaagggaggggggtttacttttcttttttaaattacaaatattataaaatgattttttgaaaattgaatt 17682  T
Q  136 aacaacatgattgatgatgatataatacttc 166  Q
    | |||||||||  || || ||||||||||||    
T  17681 agcaacatgataaataatcatataatacttc 17651  T

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Target: scaffold0119 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 37577 - 37514
Alignment:
Q  83 cttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgat 146  Q
    ||||| ||||||||||||| |||| ||||| ||||||||||||||| | |||||||||||||||    
T  37577 cttttcttttttaaattacagacaatataagatgatttttagaaaacttaattaacaacatgat 37514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 30750 - 30804
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||    
T  30750 ggaggggagggctcacttttattttttaaattacgaacaatgtaaaatgtttttt 30804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 37420 - 37472
Alignment:
Q  70 aggggagggctcacttttattttttaaattacggacattataaaatgattttt 122  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||| |||||    
T  37420 aggggagggctcacttttattttttaaattacgaacaatgtaaaatgtttttt 37472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 6816 - 6733
Alignment:
Q  44 gggtgtgtttggattgagggtttaggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaaaa 128  Q
    |||||| ||||||| |||| ||||||||||||||||| ||||||  ||||||||||||| ||| ||| |||| ||||||| ||||    
T  6816 gggtgtctttggatggaggatttaggaggggagggcttacttttcgtttttaaattacgcacactatgaaat-atttttaaaaaa 6733  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 69241 - 69340
Alignment:
Q  68 ggaggggagggctcacttttattttttaaattacggacattataaaatgatttttagaa-aattgaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| ||| | |||||| ||||||| |||| ||||||||||||  |||| | || ||||||| |||||| |||||  ||||| ||||||||||||    
T  69241 ggaggggagagcttatttttatattttaaaatacgaacattataaaatctttttaaaaagaattgaaataacaagatgataaatgatcatataatacttc 69340  T

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Target: scaffold1414 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 490 - 412
Alignment:
Q  89 ttttttaaattacggacattataaaatgatttttagaaaatt-gaattaacaacatgattgatgatgatataatacttc 166  Q
    ||||||||| ||| |  |||||||||||||||||||||||||  |||||||| ||||||  ||||| ||| ||||||||    
T  490 ttttttaaactacaggtattataaaatgatttttagaaaattaaaattaacagcatgataaatgataataaaatacttc 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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