View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6374_high_6 (Length: 241)
Name: NF6374_high_6
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6374_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 11593125 - 11592907
Alignment:
| Q |
19 |
acctgaacaacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttcta |
118 |
Q |
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| T |
11593125 |
acctgaacaacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttctt |
11593026 |
T |
|
| Q |
119 |
ccaaacatgggtcaaggaatttcacatgatgcatcttcatcacattataatcttcatactcctaatgctagagatgctaaagagcttatttgtgatgcat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
11593025 |
ccaaacatgggtcaaggaatttcacaagatgcatcttcatcacattataatcttcatactcctaatgccaaaaatgctaaagagcttatttgtgatgcat |
11592926 |
T |
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| Q |
219 |
atggtaaatgcaaacatgt |
237 |
Q |
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| T |
11592925 |
atggtaaatgcaaacatgt |
11592907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 11644994 - 11645212
Alignment:
| Q |
19 |
acctgaacaacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11644994 |
acctgaacaacaacaaacccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttctt |
11645093 |
T |
|
| Q |
119 |
ccaaacatgggtcaaggaatttcacatgatgcatcttcatcacattataatcttcatactcctaatgctagagatgctaaagagcttatttgtgatgcat |
218 |
Q |
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| T |
11645094 |
ccaaacatgggtcaaggaatttcacaagatgcatcttcatcacattataatcttcatactcctaatgccaaaaatgctaaagagcttatttgtgatgcat |
11645193 |
T |
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| Q |
219 |
atggtaaatgcaaacatgt |
237 |
Q |
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| T |
11645194 |
atggtaaatgcaaacatgt |
11645212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 37180666 - 37180703
Alignment:
| Q |
197 |
aaagagcttatttgtgatgcatatggtaaatgcaaaca |
234 |
Q |
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| T |
37180666 |
aaagagcttatttgtgatgcatatggtaaatgcaaaca |
37180703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 31069243 - 31069361
Alignment:
| Q |
35 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagatagaatcaaagaagctgcttctgttctaccaaacatgggtcaag |
134 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||| | ||| |||||| |||||| ||||| ||||| || ||||||| |
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| T |
31069243 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
31069341 |
T |
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| Q |
135 |
gaatttcacatgatgcatct |
154 |
Q |
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|||| ||||| ||| ||||| |
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| T |
31069342 |
gaatatcacaagattcatct |
31069361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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