View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6374_low_1 (Length: 511)
Name: NF6374_low_1
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6374_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Original strand, 11592414 - 11592892
Alignment:
| Q |
16 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592414 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11592513 |
T |
|
| Q |
116 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11592514 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11592613 |
T |
|
| Q |
216 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11592614 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11592713 |
T |
|
| Q |
316 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592714 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11592813 |
T |
|
| Q |
416 |
ttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11592814 |
ttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcct |
11592892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 11645705 - 11645227
Alignment:
| Q |
16 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645705 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11645606 |
T |
|
| Q |
116 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatcaatgattcaactc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11645605 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatcaatgattcaactc |
11645506 |
T |
|
| Q |
216 |
tctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttcccttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11645505 |
tctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtcccatttctttgccttt |
11645406 |
T |
|
| Q |
316 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645405 |
ttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattg |
11645306 |
T |
|
| Q |
416 |
ttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11645305 |
ttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcct |
11645227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 158 - 494
Target Start/End: Complemental strand, 37181056 - 37180721
Alignment:
| Q |
158 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
256 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
257 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
355 |
Q |
| |
|
| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
356 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
455 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
456 |
tatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcct |
37180721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University