View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6374_low_2 (Length: 505)
Name: NF6374_low_2
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6374_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 7802778 - 7802430
Alignment:
| Q |
18 |
cataccctcttcaattcaacaatcaacaatcacaaaagacttcaactttcgtttctttgaatgaatttgaatgtgaattgagttgaattttgatactagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802778 |
cataccctcttcaattcaacaatcaacaatcacaaaagacttcaactttcgtttctttgaatgaatttgaatgtgaattgagttgaattttgatactagt |
7802679 |
T |
|
| Q |
118 |
gtatatataatactagaaactgtgaaaacttaaaacgacgtcgttttcaaaataatccaaattgggaacacgtgcatgtcacgtgtcat--nnnnnnnnn |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
7802678 |
gtatatataatactagaaactgtgaaaacttaaaacgacgtcgttttcaaaataatcaaaattggtaacacgtgcatgtcacgtgtcataaaaaaaaaaa |
7802579 |
T |
|
| Q |
216 |
catgaaaagagtgaagctttctcaccataatcaattttttcagagcttagtacctttctgggctaaagtaattttgttttgtcaggtactataatcaann |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802578 |
catgaaaagagtgaagctttctcaccataataaattttttctgagcttagtacctttctgggctaaagtaattttgttttgtcaggtactataatcaatt |
7802479 |
T |
|
| Q |
316 |
nnnnngtcaatttatttgtgccctttattcaaatgttgtgttggtgtgc |
364 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802478 |
tttttgttaatttatttgtgccctttattcaaatgttgtgttggtgtgc |
7802430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 7802373 - 7802310
Alignment:
| Q |
421 |
taaagaaatgggggatttgtgttttttaaggtattcaatattcatgtttgggtttatgaatagg |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7802373 |
taaagaaatgggggatttgtgttttttaaggtattcaatattcatgtttgggtttatgaatagg |
7802310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University