View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6374_low_3 (Length: 455)

Name: NF6374_low_3
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6374_low_3
NF6374_low_3
[»] chr1 (28 HSPs)
chr1 (181-443)||(21187111-21187371)
chr1 (18-181)||(21186904-21187066)
chr1 (272-437)||(7564851-7565016)
chr1 (294-440)||(22817737-22817883)
chr1 (288-441)||(18271988-18272142)
chr1 (288-441)||(18276642-18276796)
chr1 (294-441)||(22335163-22335311)
chr1 (291-425)||(17385033-17385167)
chr1 (288-428)||(29946959-29947099)
chr1 (288-438)||(3475530-3475681)
chr1 (295-441)||(5750055-5750202)
chr1 (305-432)||(14270189-14270315)
chr1 (334-441)||(10313351-10313459)
chr1 (272-438)||(6605872-6606039)
chr1 (314-441)||(12525167-12525295)
chr1 (288-441)||(39597933-39598086)
chr1 (288-441)||(30518360-30518515)
chr1 (288-370)||(50890258-50890340)
chr1 (348-438)||(29250478-29250570)
chr1 (356-441)||(7199738-7199824)
chr1 (288-441)||(14587611-14587766)
chr1 (291-380)||(44757861-44757950)
chr1 (294-345)||(50262286-50262337)
chr1 (274-331)||(49851414-49851472)
chr1 (412-441)||(33801203-33801232)
chr1 (412-441)||(37952141-37952170)
chr1 (413-441)||(27216646-27216674)
chr1 (413-441)||(52632619-52632647)
[»] chr5 (17 HSPs)
chr5 (272-441)||(38984067-38984236)
chr5 (294-441)||(5344001-5344149)
chr5 (288-432)||(29047293-29047438)
chr5 (289-434)||(41616289-41616433)
chr5 (294-441)||(1711478-1711626)
chr5 (311-438)||(24856177-24856305)
chr5 (290-399)||(31471772-31471881)
chr5 (288-441)||(16513861-16514016)
chr5 (351-441)||(32746623-32746714)
chr5 (291-441)||(18808697-18808849)
chr5 (294-441)||(6432671-6432818)
chr5 (348-441)||(27948367-27948462)
chr5 (411-441)||(25977393-25977423)
chr5 (411-441)||(27114144-27114174)
chr5 (411-441)||(37030516-37030546)
chr5 (412-441)||(12784995-12785024)
chr5 (412-440)||(12723512-12723540)
[»] chr2 (17 HSPs)
chr2 (293-437)||(34906063-34906207)
chr2 (323-441)||(34948237-34948356)
chr2 (270-441)||(5939339-5939512)
chr2 (297-441)||(16739645-16739790)
chr2 (311-441)||(45526058-45526188)
chr2 (294-441)||(43333542-43333690)
chr2 (296-441)||(15113603-15113748)
chr2 (347-441)||(17230132-17230226)
chr2 (351-441)||(24168293-24168382)
chr2 (294-438)||(5464646-5464791)
chr2 (291-441)||(18963069-18963219)
chr2 (354-441)||(15257385-15257473)
chr2 (272-331)||(18137294-18137354)
chr2 (356-438)||(41961481-41961564)
chr2 (288-387)||(16414033-16414134)
chr2 (412-441)||(30490948-30490977)
chr2 (412-441)||(38707482-38707511)
[»] chr3 (24 HSPs)
chr3 (294-441)||(9126756-9126904)
chr3 (294-441)||(9134863-9135011)
chr3 (288-441)||(21980160-21980313)
chr3 (288-441)||(22002591-22002744)
chr3 (288-441)||(49440529-49440683)
chr3 (288-441)||(18875751-18875904)
chr3 (288-441)||(21450422-21450576)
chr3 (305-441)||(49327575-49327712)
chr3 (314-441)||(9116890-9117016)
chr3 (288-441)||(33186524-33186678)
chr3 (297-439)||(8486770-8486913)
chr3 (288-441)||(47374987-47375141)
chr3 (288-441)||(44207850-44208002)
chr3 (281-441)||(26982586-26982746)
chr3 (411-441)||(3733787-3733817)
chr3 (411-441)||(6936316-6936346)
chr3 (277-434)||(16481098-16481256)
chr3 (411-441)||(41174659-41174689)
chr3 (296-440)||(53393674-53393820)
chr3 (412-441)||(10509489-10509518)
chr3 (412-441)||(36402977-36403006)
chr3 (412-441)||(41193984-41194013)
chr3 (412-441)||(47646756-47646785)
chr3 (413-441)||(2182926-2182954)
[»] chr8 (10 HSPs)
chr8 (288-438)||(11991-12142)
chr8 (288-393)||(20091282-20091388)
chr8 (311-441)||(24830498-24830628)
chr8 (351-441)||(4258974-4259065)
chr8 (288-385)||(29544121-29544218)
chr8 (288-366)||(37098113-37098191)
chr8 (288-388)||(41834575-41834675)
chr8 (411-441)||(23144370-23144400)
chr8 (356-440)||(23421212-23421297)
chr8 (411-443)||(627220-627252)
[»] chr6 (8 HSPs)
chr6 (288-441)||(34949251-34949405)
chr6 (294-441)||(13036617-13036765)
chr6 (288-441)||(29435817-29435971)
chr6 (354-441)||(12305343-12305432)
chr6 (294-441)||(480044-480191)
chr6 (291-370)||(31318247-31318326)
chr6 (411-441)||(9305225-9305255)
chr6 (277-370)||(31271053-31271146)
[»] chr7 (11 HSPs)
chr7 (288-440)||(26791715-26791868)
chr7 (293-441)||(37998394-37998543)
chr7 (296-440)||(38257695-38257840)
chr7 (288-441)||(15032803-15032957)
chr7 (294-441)||(7255661-7255809)
chr7 (295-441)||(35585322-35585469)
chr7 (291-370)||(43457905-43457984)
chr7 (299-441)||(108434-108576)
chr7 (357-441)||(29332542-29332627)
chr7 (359-434)||(43749460-43749536)
chr7 (411-440)||(25529372-25529401)
[»] chr4 (30 HSPs)
chr4 (270-441)||(17646895-17647067)
chr4 (294-441)||(16684506-16684654)
chr4 (298-438)||(47985944-47986085)
chr4 (294-441)||(40693242-40693390)
chr4 (342-441)||(13721119-13721219)
chr4 (288-441)||(52417201-52417355)
chr4 (351-441)||(38990912-38991003)
chr4 (288-441)||(51888828-51888982)
chr4 (345-441)||(45659774-45659871)
chr4 (337-441)||(53511293-53511398)
chr4 (272-370)||(16451634-16451733)
chr4 (276-370)||(38551603-38551698)
chr4 (294-440)||(53269128-53269274)
chr4 (294-437)||(44107863-44108007)
chr4 (277-370)||(35320230-35320324)
chr4 (288-388)||(11647586-11647686)
chr4 (288-439)||(35158433-35158587)
chr4 (411-441)||(4047978-4048008)
chr4 (411-441)||(16451776-16451806)
chr4 (411-441)||(38218535-38218565)
chr4 (290-393)||(45924321-45924426)
chr4 (277-434)||(55614117-55614275)
chr4 (412-441)||(16023714-16023743)
chr4 (412-441)||(28781038-28781067)
chr4 (412-441)||(30003452-30003481)
chr4 (412-441)||(43842145-43842174)
chr4 (412-441)||(45029288-45029317)
chr4 (288-369)||(45458056-45458137)
chr4 (412-441)||(51538486-51538515)
chr4 (412-441)||(56463909-56463938)
[»] scaffold0168 (1 HSPs)
scaffold0168 (294-441)||(11924-12072)
[»] scaffold1301 (1 HSPs)
scaffold1301 (412-441)||(1502-1531)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 181 - 443
Target Start/End: Original strand, 21187111 - 21187371
Alignment:
Q  181 aatgtgtcatcaaggtataatggtcttaaatcttggtagtaatgattgaatgaggattaaatgaagcctatggctttttcttcttcttgttgagatttac 280  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  21187111 aatgtgtcatcaaggtataatggtcttaaatcttgataataatgattgaatgaggattaaatgaagcctatggccttttcttcttcttgtggagatttac 21187210  T
Q  281 ttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaa 379  Q
    |||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  21187211 ttttcccaccctgctgccttctcgcgcgccatgcaaaagttccaaaaataccattagtctggattacgttttccgaaccaaattgttagtgtttcctgaa 21187310  T
Q  380 aataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctgct 443  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  21187311 aataaaattcggacgcatacaatatgaa--attgtgtatttctttgatgtcaa-ggtctctgct 21187371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 21186904 - 21187066
Alignment:
Q  18 ggagattgtgtgtatttatagacaaagaaatgaaaaagatgttggcttttgttcttcatctaaatatgggaatattacggtatggaaggatcgataagag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21186904 ggagattgtgtgtatttatagacaaagaaatgaaaaagatgttggcttttgttcttcatctaaatatggga-tattacggtatggaaggatcgataagag 21187002  T
Q  118 agacttagacgacaagatctctcaggtacgatctgactttcgttccatacacccttaatcacta 181  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21187003 aaacttagacgacaagatctctcaggtacgatctgactttcgttccatacacccttaatcacta 21187066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 272 - 437
Target Start/End: Complemental strand, 7565016 - 7564851
Alignment:
Q  272 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||||||| || ||||||||||||||| |||||  ||||||| ||||||||||| | |||||| ||||||||||||||| |||||||||||||||    
T  7565016 gagatttacttttcccaccctgctgccttctcgcgcgctttgcaaaaattccaaaaatatccttggtccggattacgttttccggaccagattgttagtg 7564917  T
Q  371 tttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtc 437  Q
    ||||  ||||||||||| || |||||| | ||||||||| |||||||||||||||||||||||||||    
T  7564916 tttctggaaaataaaatccgtacgcatgcgatatgaaat-ttgtgtctttctttgatgtcaagggtc 7564851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 294 - 440
Target Start/End: Complemental strand, 22817883 - 22817737
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||| ||||||||| |||| ||||||   ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  22817883 tgccttctcgcgcgccctgcaaaagtcccaataataccccaggtttggatttcgttttctgaaccagattgttagtgtttccggaaaataaaatccggac 22817784  T
Q  394 gcatacaatatgaaatattgtgtctttctttgatgtcaagggtctct 440  Q
    |||||   |||||||| |||||| |||||||||||||||||||||||    
T  22817783 gcatatgctatgaaattttgtgtttttctttgatgtcaagggtctct 22817737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 18271988 - 18272142
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| ||||||  |||||| ||||| ||||||| ||||||| ||||| ||  |||| |||||||||||||||||||| ||| ||| |||    
T  18271988 ccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataat 18272087  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  18272088 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 18272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 18276642 - 18276796
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| ||||||  |||||| ||||| ||||||| ||||||| ||||| ||  |||| |||||||||||||||||||| ||| ||| |||    
T  18276642 ccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataat 18276741  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  18276742 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 18276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 22335311 - 22335163
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||| ||||||| ||| | |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  22335311 tgccttctcgcgcgccctgcaaaaattctataaatacccctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggac 22335212  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||||||||||| || || ||||||||||||||||||||||||||||    
T  22335211 aaatacaatatgaatattttctgtctttctttgatgtcaagggtctctg 22335163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 291 - 425
Target Start/End: Complemental strand, 17385167 - 17385033
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcg 390  Q
    |||||||||||| | ||||||||| || |||||| |||||| |||||  | ||| |||||| ||||||||||||||||||||| | ||||||||||| ||    
T  17385167 tgctgccttctcgcacgccatgcagaaattccaataatacccttggttcgaatttcgtttttcgaaccagattgttagtgttttcagaaaataaaatccg 17385068  T
Q  391 gacgcatacaatatgaaatattgtgtctttctttg 425  Q
    ||||||| |  ||||||||  ||||||||||||||    
T  17385067 gacgcatgcgctatgaaattgtgtgtctttctttg 17385033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 428
Target Start/End: Complemental strand, 29947099 - 29946959
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  29947099 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacccatggtc-ggattacgtaatccggaccagattgttagtgtttccggaatatataat 29947001  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatg 428  Q
    ||||||  |||| ||||||| || ||||||||||||||||||    
T  29947000 tcggacaaatacgatatgaatattttgtgtctttctttgatg 29946959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 288 - 438
Target Start/End: Complemental strand, 3475681 - 3475530
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| || ||| | ||||| ||||| |||||||  || || |||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  3475681 ccctgttgccttctcgcgtgccctacaaaaattccataaatacccctgatccggattacgtaatccggaccagattgttagtgtttccagaatatataat 3475582  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
    ||||||  |||| ||||||| || || |||||||||||||||||||||||||    
T  3475581 tcggacaaatacgatatgaatattttttgtctttctttgatgtcaagggtct 3475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 5750202 - 5750055
Alignment:
Q  295 gccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacg 394  Q
    ||||||||  ||||| ||||||| |||||||||||||  ||||| |||||||||  |||| ||||||||||||||||||||  || ||| ||| | |||     
T  5750202 gccttctcgggcgccctgcaaaaattccaaaaatacccctggtccggattacgtaatccggaccagattgttagtgtttccgtaatatataatccagaca 5750103  T
Q  395 catacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||| ||||||| || ||||||||||||||||||| |||||||||||    
T  5750102 aatacgatatgaatattttgtgtctttctttgatgtaaagggtctctg 5750055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 305 - 432
Target Start/End: Original strand, 14270189 - 14270315
Alignment:
Q  305 gcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatat 404  Q
    ||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||    
T  14270189 gcgccctgcaaaaattccataaatacctctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatat 14270288  T
Q  405 gaaatattgtgtctttctttgatgtcaa 432  Q
    | ||||||||||||||||||||||||||    
T  14270289 g-aatattgtgtctttctttgatgtcaa 14270315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 441
Target Start/End: Complemental strand, 10313459 - 10313351
Alignment:
Q  334 tggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaa 432  Q
    |||||| ||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || ||||||||||||||||||| ||    
T  10313459 tggtctagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgttaa 10313360  T
Q  433 gggtctctg 441  Q
    |||||||||    
T  10313359 gggtctctg 10313351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 438
Target Start/End: Complemental strand, 6606039 - 6605872
Alignment:
Q  272 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||||||| || |||||| || ||||| ||| || |  |||| || ||| ||||||  ||||| |||||  ||||||| ||||||||||||||||    
T  6606039 gagatttacttttcccaccctgccgctttctcgcgcaccctataaaaatttcaataatacccctggtccggatttagttttccaaaccagattgttagtg 6605940  T
Q  371 tttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
    ||||| ||||||||||| |||||  ||||  |||||| || |||| ||||||||||||||||| |||||    
T  6605939 tttccggaaaataaaatccggacaaatacgttatgaatattttgt-tctttctttgatgtcaatggtct 6605872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 12525295 - 12525167
Alignment:
Q  314 aaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atatt 412  Q
    |||| ||||| |||||||  ||||| |||||||||  |||| |||| ||||||||||||||| ||| ||| ||| | |||  |||| ||||||| || |     
T  12525295 aaaaattccataaatacccctggtccggattacgtaatccggaccaaattgttagtgtttccggaatatataatccagacaaatacgatatgaatatttg 12525196  T
Q  413 gtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||    
T  12525195 gtgtctttctttgatgtcaagggtctctg 12525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 39597933 - 39598086
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| |||||||||||||||| | ||||| ||||| |||||||  ||  | |||||||||  |||| ||||||||||||||||||||  || ||| |||    
T  39597933 ccctgttgccttctcacgcgccctacaaaa-ttccataaatacccctgagccggattacgtaatccggaccagattgttagtgtttccataatatataat 39598031  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      ||||  |||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  39598032 ctggacaaatacgatatgaatattttgtgtctttcgttgatgtcaaaggtctctg 39598086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 30518515 - 30518360
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 386  Q
    ||||||||||||||||||| || || |||| | |||||| |||| ||||| ||||||   |||||||||||| |||||||||| ||| | ||   |||||    
T  30518515 ccctgctgccttctcacgcaccctgaaaaaatgccaaaattacccttggtttggattttattttccgaaccacattgttagtgattttcggattttaaaa 30518416  T
Q  387 ttcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
    | |||||     ||||||||||| || |||||||| ||||||||||||||||||||    
T  30518415 tccggacaacgtcaatatgaaattttagtgtctttttttgatgtcaagggtctctg 30518360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 50890258 - 50890340
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||||||||||| |||| ||||||| || |||||||||   |||||  ||||  ||||||||||||||||||||||||    
T  50890258 ccctgctgccttctcacacgccctgcaaaaatttcaaaaatactcctggtccagattttgttttccgaaccagattgttagtg 50890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 438
Target Start/End: Original strand, 29250478 - 29250570
Alignment:
Q  348 ttttccgaaccagattgttagtg-tttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtct 438  Q
    |||| |||||||||||||||||| ||||| |||| |||||| |||||  |||  ||||||||| || ||||||||||||||||| ||||||||    
T  29250478 tttttcgaaccagattgttagtgatttccggaaactaaaatccggacaaatatgatatgaaatttttgtgtctttctttgatgttaagggtct 29250570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 441
Target Start/End: Complemental strand, 7199824 - 7199738
Alignment:
Q  356 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||| ||| ||| ||| |  ||  |||| ||||||| || |||||||||||||||||||||| ||||||||    
T  7199824 accagattgttagtgtttccagaatatataatccaaacaaatacgatatgaatattttgtgtctttctttgatgtcaatggtctctg 7199738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 14587766 - 14587611
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 386  Q
    ||||||||||||||||||| || ||||||| || | ||||||||  ||||| ||||||| |  |||| | ||||||||||||| ||||| ||||   |||    
T  14587766 ccctgctgccttctcacgcaccctgcaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagtgatttccggaaacagaaa 14587667  T
Q  387 ttcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 441  Q
    | ||||| || |   |||| ||| |  ||||||||||||||||||||||||||||||    
T  14587666 tccggac-cagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 14587611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 44757950 - 44757861
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa 380  Q
    |||||||||||| |||||| ||||||| || || |||||||  | ||   ||||||||  ||||||||||||||||||||||||| ||||    
T  44757950 tgctgccttctcgcgcgccctgcaaaaatttcataaatacccctagttcagattacgtaatccgaaccagattgttagtgtttccggaaa 44757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 50262337 - 50262286
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggatta 345  Q
    |||||||||||||||| ||||||| |||||||||||||  | ||||||||||    
T  50262337 tgccttctcacgcgccctgcaaaatttccaaaaatacccctagtctggatta 50262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 49851414 - 49851472
Alignment:
Q  274 gatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaatacc 331  Q
    ||||||||||| || ||||||||||||||| |||||| | ||||| |||||||||||||    
T  49851414 gatttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaatacc 49851472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 33801203 - 33801232
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  33801203 tgtgtctttctttgatgtcaagggtctctg 33801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 37952141 - 37952170
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  37952141 tgtgtctttctttgatgtcaagggtctctg 37952170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 27216646 - 27216674
Alignment:
Q  413 gtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||    
T  27216646 gtgtctttctttgatgtcaagggtctctg 27216674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Complemental strand, 52632647 - 52632619
Alignment:
Q  413 gtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||    
T  52632647 gtgtctttctttgatgtcaagggtctctg 52632619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 272 - 441
Target Start/End: Original strand, 38984067 - 38984236
Alignment:
Q  272 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    |||||||| |||| || ||||| |||||||||||||||| ||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  38984067 gagatttaattttcccaccctgttgccttctcacgcgccctgcaaaaattccaaaaatacc-ttgatccggattacgttttccgaaccagattgttagtg 38984165  T
Q  371 tttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||| |||| ||||||  | |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  38984166 tttccagaaagtaaaatctgaacgcatacaatatgaaattttgtgtctttctttgatgtcaagagtctctg 38984236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 5344149 - 5344001
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  5344149 tgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtgtttccagaatatataatccggac 5344050  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  5344049 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 5344001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 432
Target Start/End: Complemental strand, 29047438 - 29047293
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||||| ||||| ||||||||| ||||||||||  || ||| |||    
T  29047438 ccctgttgccttctcgcgcgccctgcaaaaattccaaaaatacccctggtccggattacgtattccggaccagattgctagtgtttccgaaacatataat 29047339  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaa 432  Q
    ||||||  ||||||||| || || ||||||||||||||||||||||    
T  29047338 tcggacaaatacaatataaatattttgtgtctttctttgatgtcaa 29047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 434
Target Start/End: Complemental strand, 41616433 - 41616289
Alignment:
Q  289 cctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaatt 388  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||  || || |||||||||||| ||||| ||||||||||||||||| |||| |||||||    
T  41616433 cctgctgccttctcatgcgccttgcaaaaattccaataatacccctgatccggattacgtttttcgaacaagattgttagtgtttcc-gaaattaaaatt 41616335  T
Q  389 cggacgcatacaatatgaaatattgtgtctttctttgatgtcaagg 434  Q
     |||||||||| ||||  |||  |||||||||| ||||||||||||    
T  41616334 tggacgcatacgatatctaattgtgtgtctttcattgatgtcaagg 41616289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 1711626 - 1711478
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    |||||||||||||||| ||||||| || || |||||||  ||||| |||||||||  || | ||||||||||||||||||   ||| ||| ||| |||||    
T  1711626 tgccttctcacgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatcaggaccagattgttagtgtttttggaatatataatccggac 1711527  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  1711526 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 1711478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 24856305 - 24856177
Alignment:
Q  311 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-at 409  Q
    ||||||| ||||| |||||||| |||||  ||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| ||    
T  24856305 tgcaaaaattccataaataccactggtccagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatat 24856206  T
Q  410 attgtgtctttctttgatgtcaagggtct 438  Q
     |||||||||| |||||||||||||||||    
T  24856205 tttgtgtctttttttgatgtcaagggtct 24856177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 399
Target Start/End: Complemental strand, 31471881 - 31471772
Alignment:
Q  290 ctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattc 389  Q
    ||||||||||||| |||||| || |||| ||||| ||||| |  ||||| | |||| |||||||||||||||||||||||||||   |||||||||||      
T  31471881 ctgctgccttctcgcgcgccttgaaaaaattccacaaatatccctggtccgaattatgttttccgaaccagattgttagtgtttttggaaaataaaatct 31471782  T
Q  390 ggacgcatac 399  Q
    ||||||||||    
T  31471781 ggacgcatac 31471772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 16514016 - 16513861
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaata-aaa 386  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||| ||| || ||||||| |  |||| | ||||||||||||| ||   ||||| | |||    
T  16514016 ccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacctttgatccggattacataatccggatcagattgttagtgattttcgaaaacagaaa 16513917  T
Q  387 ttcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 441  Q
    | ||||| ||||   |||| ||| |  ||||||||||||||||||||||||||||||    
T  16513916 tccggac-catatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 32746623 - 32746714
Alignment:
Q  351 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||| |||||||||||||||||||| ||| ||| ||  |||||  |||| ||||||  || |||||||||||||||||||||||||||||||    
T  32746623 tccggaccagattgttagtgtttccggaatatataacccggacaaatacgatatgagtattttgtgtctttctttgatgtcaagggtctctg 32746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 441
Target Start/End: Original strand, 18808697 - 18808849
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaata-aaattc 389  Q
    |||||||| |||||||||| ||||||| || | |||||||| ||||||  |||||| |  |||| | ||||||||||||| || ||| ||||| ||||||    
T  18808697 tgctgcctcctcacgcgccctgcaaaatttactaaaatacccttggtccagattacataatccggatcagattgttagtgatttctggaaatagaaattc 18808796  T
Q  390 ggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 441  Q
    |||| || |   |||| ||| |  ||||||||||||||||||||||||||||||    
T  18808797 ggac-cagatgttatgtaatttcctgtgtctttctttgatgtcaagggtctctg 18808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 6432818 - 6432671
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||| | ||||||| || ||||| ||||  |||| |||||| ||| | ||| |||| ||||||||||||||| ||| | | ||| | |||    
T  6432818 tgccttctcgcgcgtcctgcaaaaatttcaaaactacccctggtatggatttcgtat-ccggaccaaattgttagtgtttccggaacagataatccagac 6432720  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || ||||||||||||| |||||||||||||||||    
T  6432719 aaatacgatatgaatattttgtgtctttcttcgatgtcaagggtctctg 6432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 27948367 - 27948462
Alignment:
Q  348 ttttccgaaccagattgttagtgtttcctgaaaa-taaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||| |||||||||||||||   ||||| |||||||| ||   |||| ||||||||| || |||||||||||||||||||| ||||||||    
T  27948367 ttttccgaactagattgttagtgttttgcgaaaactaaaattcagaaaaatacgatatgaaatttttgtgtctttctttgatgtcaaaggtctctg 27948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 25977423 - 25977393
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  25977423 ttgtgtctttctttgatgtcaagggtctctg 25977393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 27114144 - 27114174
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  27114144 ttgtgtctttctttgatgtcaagggtctctg 27114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 37030546 - 37030516
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  37030546 ttgtgtctttctttgatgtcaagggtctctg 37030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 12784995 - 12785024
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  12784995 tgtgtctttctttgatgtcaagggtctctg 12785024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 12723512 - 12723540
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctct 440  Q
    |||||||||||||||||||||||||||||    
T  12723512 tgtgtctttctttgatgtcaagggtctct 12723540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 293 - 437
Target Start/End: Original strand, 34906063 - 34906207
Alignment:
Q  293 ctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcgga 392  Q
    |||||||||| || ||| |||||||  |||||||||||   ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  34906063 ctgccttctcgcgtgccctgcaaaaaatccaaaaatactcctggtccggattaccttttccgaaccagattgttagtgtttccggaaaataaaatccgga 34906162  T
Q  393 cgcatacaatatgaaatattgtgtctttctttgatgtcaagggtc 437  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  34906163 cgcatacgatatgaaattttgtgtctttctttgatgtcaagggtc 34906207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 441
Target Start/End: Original strand, 34948237 - 34948356
Alignment:
Q  323 aaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttc 421  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||| |  |||||||||||||||| || |||||||||||    
T  34948237 aaaaatatctttggtccggattacgttttccgaaccagattgttagtatttccggaaaatacaatccaaacgcatacaatatgaatattttgtgtctttc 34948336  T
Q  422 tttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||    
T  34948337 tttgatgtcaagggtctctg 34948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 441
Target Start/End: Complemental strand, 5939512 - 5939339
Alignment:
Q  270 ttgagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag 368  Q
    ||||||||||||||| |  ||||| || ||||||||| ||||||||||| ||| |||||||||  | ||  ||||||||||||||||| |||||||||||    
T  5939512 ttgagatttacttttcctaccctgttgtcttctcacgtgccatgcaaaaattcgaaaaatacccctagttcggattacgttttccgaatcagattgttag 5939413  T
Q  369 tgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||| ||||||| ||| || || ||||| ||||||| || |||||||||||||||||||||||||| ||||    
T  5939412 ggtttccggaaaatacaatccgaacacatacgatatgaatattttgtgtctttctttgatgtcaagggtttctg 5939339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 16739790 - 16739645
Alignment:
Q  297 cttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgca 396  Q
    |||||| |||| | ||||||| ||||||||||||   |||| ||| ||||||||| |||||||||| |||||||||||| ||||| |||||  |||||||    
T  16739790 cttctcgcgcgtcctgcaaaaattccaaaaatacacctggtttggtttacgtttttcgaaccagatagttagtgtttccggaaaagaaaatctggacgca 16739691  T
Q  397 tacaatatgaaatattgtgtctttctttgatgtc-aagggtctctg 441  Q
    |||  |||||||| |||||||||||||||||||| |||||||||||    
T  16739690 tacgctatgaaattttgtgtctttctttgatgtcaaagggtctctg 16739645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 45526058 - 45526188
Alignment:
Q  311 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaata 410  Q
    ||||||| |||||| |||| | |||||  ||||| ||||||| ||||||||||||||||||||||  ||||||||||  ||||||||||  |||||||      
T  45526058 tgcaaaaattccaataatatctttggttcggatttcgttttctgaaccagattgttagtgtttccgaaaaataaaatctggacgcatacgctatgaaagt 45526157  T
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||| ||||||||||||||    
T  45526158 ttgtgtctttctttgaagtcaagggtctctg 45526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 43333542 - 43333690
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||| | ||||||| ||||| ||||||   ||||| |||||||||  ||||  ||||||||||||||||||| ||| ||| ||| |||||    
T  43333542 tgccttctcgcgcgtcctgcaaaaattccataaatactcctggtccggattacgtaatccgggccagattgttagtgtttccggaatatataatccggac 43333641  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||||||||||| || |||||||||||||||||||||||||||||||    
T  43333642 aaatacaatatgaatattttgtgtctttctttgatgtcaagggtctctg 43333690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 296 - 441
Target Start/End: Complemental strand, 15113748 - 15113603
Alignment:
Q  296 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgc 395  Q
    ||||||| ||| || ||||||| ||||||||||| |  ||||| |||||| || ||||  |||||||||||||||||||| ||| ||| ||| ||||       
T  15113748 ccttctcgcgcaccctgcaaaa-ttccaaaaatagccctggtcaggattatgtattccagaccagattgttagtgtttccggaacatataatccggaaaa 15113650  T
Q  396 atacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||    
T  15113649 atacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 15113603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 441
Target Start/End: Original strand, 17230132 - 17230226
Alignment:
Q  347 gttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||| |||||||||||||||| |||| | ||||||||||| || ||  |||| ||||||||  |||||||||||||||||||||| ||||||||    
T  17230132 gtttttcgaaccagattgttagagttttcagaaaataaaatccgaacatatacgatatgaaaagttgtgtctttctttgatgtcaaaggtctctg 17230226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 24168293 - 24168382
Alignment:
Q  351 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||| |||| || ||| | |||  |||| ||||||| |||| ||||||||||||||||||||||||||||    
T  24168293 tccgaaccagattgttagtgtttccggaaactacaatccagacaaatacgatatgaa-tattttgtctttctttgatgtcaagggtctctg 24168382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 438
Target Start/End: Complemental strand, 5464791 - 5464646
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||  ||||||| || || |||||||  ||||| |||||| ||  || | |||| ||||||||||||||| ||| ||| ||| |||||    
T  5464791 tgccttctcgcgcgctctgcaaaaatttcataaatacccctggtccggattatgtaatctggaccaaattgttagtgtttccggaatatataatccggac 5464692  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
      |||| ||||||| || ||||||||||||||||||||||||||||    
T  5464691 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 5464646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 441
Target Start/End: Original strand, 18963069 - 18963219
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaa-taaaattc 389  Q
    |||||||||||||||||||  |||||| ||| |||||||||  ||||  |||||   |||| |||||||||||||||||  || ||| ||| ||||||||    
T  18963069 tgctgccttctcacgcgcc--gcaaaaattctaaaaatacccctggttcggattttatttttcgaaccagattgttagttctttctggaaactaaaattc 18963166  T
Q  390 ggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
    |||    ||| ||||||||| || |||||||||||||||||||||||||||||    
T  18963167 ggaaaattacgatatgaaatttttgtgtctttctttgatgtcaagggtctctg 18963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 15257473 - 15257385
Alignment:
Q  354 gaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||| | ||||| |||||||||||  |  | ||||||| || |||||||||||||||||||||| ||| ||||    
T  15257473 gaaccagattgttagtgttttcggaaaagaaaattcggactaaatcgatatgaatattttgtgtctttctttgatgtcaaaggtttctg 15257385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 18137294 - 18137354
Alignment:
Q  272 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaatacc 331  Q
    ||||||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||||    
T  18137294 gagatttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacc 18137354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 438
Target Start/End: Original strand, 41961481 - 41961564
Alignment:
Q  356 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
    |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || |||| |||||||||||||| ||||||||    
T  41961481 accagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtatctttctttgatgttaagggtct 41961564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 16414033 - 16414134
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctg-gattacgttttccgaaccagattgttagtg-tttcctgaaaataaa 385  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||  ||||| |  |||   |||| |||||||||||||||||| ||||| |||| ||||    
T  16414033 ccctgctgtcttctcacgcgccttgcaaaaattccaaaaatacctctggtccgaaattttatttttcgaaccagattgttagtgctttccggaaactaaa 16414132  T
Q  386 at 387  Q
    ||    
T  16414133 at 16414134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 30490977 - 30490948
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  30490977 tgtgtctttctttgatgtcaagggtctctg 30490948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 38707511 - 38707482
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  38707511 tgtgtctttctttgatgtcaagggtctctg 38707482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 9126756 - 9126904
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||| ||| |||||| ||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||| ||| ||| | | |    
T  9126756 tgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtc 9126855  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  9126856 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 9126904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 9134863 - 9135011
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||| ||| |||||| ||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||| ||| ||| | | |    
T  9134863 tgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtc 9134962  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  9134963 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 9135011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 21980313 - 21980160
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||| ||||||| |||||| ||||||| |||| | |||| |  ||||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||    
T  21980313 ccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccggatttcgttttccgaaccagattgttagagttttcggaaattaaaat 21980214  T
Q  388 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||||||||  |||||||| || ||| |||||||||||| |||||||||||    
T  21980213 ccggacgcatacgttatgaaattttatgtttttctttgatgttaagggtctctg 21980160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 22002744 - 22002591
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||| ||||||| |||||| ||||||| |||| | |||| |  ||||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||    
T  22002744 ccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccggatttcgttttccgaaccagattgttagagttttcggaaattaaaat 22002645  T
Q  388 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||||||||  |||||||| || ||| |||||||||||| |||||||||||    
T  22002644 ccggacgcatacgttatgaaattttatgtttttctttgatgttaagggtctctg 22002591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 49440683 - 49440529
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| || || |||||||  ||||| |||||||||  |||| |||||||||||||||| ||| ||| ||| |||    
T  49440683 ccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgttagtgtatccggaatatataat 49440584  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  49440583 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 49440529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 18875751 - 18875904
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||||||||||| | |||| | ||||| |||| | |||  | |||||||||||| | |||| |||||||||||||||| ||| || |||| ||||||    
T  18875751 ccctgctgccttctcgcacgccctccaaaatttcctataatttccttggtctggatttcatttttcgaaccagattgttagagttaccggaaattaaaat 18875850  T
Q  388 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||||||||| |||||||| |||||| || ||||||||| |||||||||||    
T  18875851 ccggacgcatacactatgaaattttgtgttttgctttgatgttaagggtctctg 18875904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 21450576 - 21450422
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||    ||||| |||||||||  |||  |||||||||||||||||||| ||| ||| |||    
T  21450576 ccctgttgccttctcgcgcgccttgcaaaaattccataaatatatctggtccggattacgtaatccataccagattgttagtgtttccagaatatataat 21450477  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  21450476 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 21450422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 49327712 - 49327575
Alignment:
Q  305 gcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatat 404  Q
    ||||| ||||||| ||||| ||||| | |||||||| |||||||  |||| |||||||||||| ||||| | ||| ||| |||||||||  |||| ||||    
T  49327712 gcgccctgcaaaaattccataaatatccttggtctgaattacgtaatccggaccagattgttattgttttcggaatatataattcggacaaatacgatat 49327613  T
Q  405 gaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    ||| || |||||||||||||||||||||||||||||||    
T  49327612 gaatattttgtgtctttctttgatgtcaagggtctctg 49327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 314 - 441
Target Start/End: Original strand, 9116890 - 9117016
Alignment:
Q  314 aaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattg 413  Q
    |||| |||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||  ||| ||| ||| ||| |  |||| ||||| |||||||    
T  9116890 aaaaattccaaaaatacccctggtccggattacgtattccgaaccagattgttagtgtttctggaatatataatccggtcaaatacgatatg-aatattg 9116988  T
Q  414 tgtctttctttgatgtcaagggtctctg 441  Q
    ||  ||||||||||||||||||||||||    
T  9116989 tgcatttctttgatgtcaagggtctctg 9117016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 33186524 - 33186678
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| ||| | ||||| |  || ||||||||||||  ||||||||||||||| ||||||||| ||| ||| |||    
T  33186524 ccctgttgccttctcgcgcgccctgcaaaaattctataaatatccctgatctggattacgtaatccgaaccagattgtcagtgtttccggaatatataat 33186623  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     || ||  |||| ||||||| || ||||||||||||||||| |||||||||||||    
T  33186624 ccgaacaaatacgatatgaatattttgtgtctttctttgatatcaagggtctctg 33186678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 439
Target Start/End: Complemental strand, 8486913 - 8486770
Alignment:
Q  297 cttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgca 396  Q
    |||||| |||||||||||||| || ||||| |||   ||||| ||||| ||| |  || ||||||||||||||||||||  || | | |||||||||  |    
T  8486913 cttctcgcgcgccatgcaaaaatttcaaaattactcctggtccggatttcgtatagcggaccagattgttagtgtttccgaaacaaataattcggacaaa 8486814  T
Q  397 tacaatatgaa-atattgtgtctttctttgatgtcaagggtctc 439  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  8486813 tacaatatgaatattttgtgtctttctttgatgtcaagggtctc 8486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 47375141 - 47374987
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| | ||||| || || ||||||   ||||| | |||||||  |||| |||||||||| ||||||||| ||| ||| |||    
T  47375141 ccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctggtccgaattacgtaatccggaccagattgtaagtgtttccggaatatataat 47375042  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||| || |||||||||||    
T  47375041 ccggacaaatacgatatgaatattttgtgtctttctttgacgttaagggtctctg 47374987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 44208002 - 44207850
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  ||||  |||||| ||  ||   |||||||||||||||||||| ||| ||| | |    
T  44208002 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacctctggttcggattatgtaatcttgaccagattgttagtgtttccggaatatatagt 44207903  T
Q  388 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 441  Q
     | |||   ||| ||||| |||||| ||||||||||||||||||||||||||||    
T  44207902 ccagacaagtacgatatg-aatattttgtctttctttgatgtcaagggtctctg 44207850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 441
Target Start/End: Complemental strand, 26982746 - 26982586
Alignment:
Q  281 ttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa 380  Q
    |||||| |||| ||| ||||||||||||| | ||||| || ||||||||||  |||||  ||||   |||||| |||||||||||||||| || | |||     
T  26982746 ttttacaccctactgtcttctcacgcgccctacaaaaatttcaaaaatacctctggtccagattt--ttttccaaaccagattgttagtgctttccgaat 26982649  T
Q  381 at-aaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
     | ||||||||||   |  | ||||||||| || |||||||||||||||||||||||||||||    
T  26982648 tttaaaattcggaaaaaatcgatatgaaatttttgtgtctttctttgatgtcaagggtctctg 26982586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 3733817 - 3733787
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  3733817 ttgtgtctttctttgatgtcaagggtctctg 3733787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 6936316 - 6936346
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  6936316 ttgtgtctttctttgatgtcaagggtctctg 6936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 16481098 - 16481256
Alignment:
Q  277 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcct 376  Q
    |||||||| | ||||| || |||||| |||||| || |||| ||||| |||||||  |||||  ||||||||  || | ||||||||||||||||||       
T  16481098 ttacttttccaccctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatg 16481197  T
Q  377 gaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 434  Q
    ||| ||  ||| |||||   ||| |||| || || ||||||||||||||||||||||||    
T  16481198 gaatatgtaatccggacaactacgatataaatattttgtgtctttctttgatgtcaagg 16481256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 41174659 - 41174689
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  41174659 ttgtgtctttctttgatgtcaagggtctctg 41174689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 440
Target Start/End: Original strand, 53393674 - 53393820
Alignment:
Q  296 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaat-aaaattcggacg 394  Q
    |||||||||||||| ||||||| ||| ||||||||   ||||| |||| |  |||| |||||||||||||||||| || ||| |  | ||||| | |||     
T  53393674 ccttctcacgcgccctgcaaaaattctaaaaatactcctggtccggatcatatttttcgaaccagattgttagtgctttctggattttaaaatccagaca 53393773  T
Q  395 catacaatatgaaatatt-gtgtctttctttgatgtcaagggtctct 440  Q
     |    ||||||||| || ||||||||||||||||||||||||||||    
T  53393774 aaattgatatgaaatttttgtgtctttctttgatgtcaagggtctct 53393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 10509518 - 10509489
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  10509518 tgtgtctttctttgatgtcaagggtctctg 10509489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 36403006 - 36402977
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  36403006 tgtgtctttctttgatgtcaagggtctctg 36402977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 41194013 - 41193984
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  41194013 tgtgtctttctttgatgtcaagggtctctg 41193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 47646756 - 47646785
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  47646756 tgtgtctttctttgatgtcaagggtctctg 47646785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 441
Target Start/End: Original strand, 2182926 - 2182954
Alignment:
Q  413 gtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||    
T  2182926 gtgtctttctttgatgtcaagggtctctg 2182954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 438
Target Start/End: Complemental strand, 12142 - 11991
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  |||||||||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  12142 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtctggattacgtaatccggaccagattgttagtgtttccggaatatataat 12043  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
     |||||  |||| ||||||| || ||||||||||||||||||||||||||||    
T  12042 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 393
Target Start/End: Original strand, 20091282 - 20091388
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 386  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||  |||||||||||||||  |||| ||||||||||||||| ||||| |||||| |||    
T  20091282 ccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagtgatttccggaaaattaaa 20091381  T
Q  387 ttcggac 393  Q
    | |||||    
T  20091382 tccggac 20091388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 441
Target Start/End: Original strand, 24830498 - 24830628
Alignment:
Q  311 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-at 409  Q
    ||||||| ||| | |||||||  ||||||| |||||||  | || ||||||||||||||||||| |||| ||| ||| |||||  |||| ||||||| ||    
T  24830498 tgcaaaaattctataaatacctctggtctgaattacgtaattcggaccagattgttagtgtttcttgaatatataatccggacaaatacgatatgaatat 24830597  T
Q  410 attgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||||||||||||||||| ||||||||||    
T  24830598 tttgtgtctttctttgatgtc-agggtctctg 24830628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 4259065 - 4258974
Alignment:
Q  351 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||  || |||||||| |||| |||||| | |||  | |||||||| |||||| |||||||||||||||||||||||||||||    
T  4259065 tccgaaccagatgattggtgtttccggaaactaaaatccagacaaaaacaatatgcaatatttgtgtctttctttgatgtcaagggtctctg 4258974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 29544121 - 29544218
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaa 385  Q
    |||||||||||||||  ||||| ||||||| |||||||||||||  ||||| | ||||  |  |||| |||||||||||||||||||| |||| ||||    
T  29544121 ccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctggtccgaattatataatccggaccagattgttagtgtttccggaaactaaa 29544218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 366
Target Start/End: Original strand, 37098113 - 37098191
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgtt 366  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||||  ||||||||||||  |  |||| |||||||||||    
T  37098113 ccctgttgccttctcgcgcgccctgcaaaatttccaaaaatacccatggtctggattatataatccggaccagattgtt 37098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 388
Target Start/End: Original strand, 41834575 - 41834675
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||||||||||  |||||  ||||||| || ||| ||||||  |||   ||||| ||||||  |||||||||||||||||||| | |||||||||||    
T  41834575 ccctgctgccttctagcgcgctctgcaaaaatttcaataatacccctggctcggatttcgttttttgaaccagattgttagtgttttcggaaaataaaat 41834674  T
Q  388 t 388  Q
    |    
T  41834675 t 41834675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 23144400 - 23144370
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  23144400 ttgtgtctttctttgatgtcaagggtctctg 23144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 23421297 - 23421212
Alignment:
Q  356 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 440  Q
    ||||||||||||||||||||  || ||| ||| || ||  |||| ||||||| || || |||||||||||||||| ||||||||||    
T  23421297 accagattgttagtgtttccgaaatatataatccgaacaaatacgatatgaatattttatgtctttctttgatgttaagggtctct 23421212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 443
Target Start/End: Original strand, 627220 - 627252
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctgct 443  Q
    |||||||||||||||||||||||||||| ||||    
T  627220 ttgtgtctttctttgatgtcaagggtctttgct 627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 34949251 - 34949405
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| || ||| ||||||||||||| |||||||  ||||| |||||||||  ||||||||||||||||||||||||| ||| ||| |||    
T  34949251 ccctgttgccttctcgcgtgccctgcaaaagttccataaatacccctggtccggattacgtaatccgaaccagattgttagtgtttccggaatatataat 34949350  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || |||||||||||||||| ||||||| ||||||    
T  34949351 ccggacaaatacgatatgaatattttgtgtctttctttgacgtcaaggatctctg 34949405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 13036617 - 13036765
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||||||||||| || || ||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||  ||| ||| ||||     
T  13036617 tgccttctcgcgcgccatgcaaaaatttcataaatacccttggtctggattacgtattccggaccagattgttagtgtttccggattatataatccggat 13036716  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||| ||| ||||||| ||||||||    
T  13036717 aaatacgatatgaatattttgtgtctttttttcatgtcaatggtctctg 13036765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 29435817 - 29435971
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||||  ||||||| || || |||||||  || || |||||||||  || | |||||||||||||||||||  ||| ||| |||    
T  29435817 ccctgttgccttctcgcgcgctctgcaaaaatttcataaatacccctgatccggattacgtaatctggaccagattgttagtgtttctggaatatataat 29435916  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     || ||  |||||||||||| || ||||||||||||||||||||||| |||||||    
T  29435917 ccgaacaaatacaatatgaatattttgtgtctttctttgatgtcaagagtctctg 29435971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 441
Target Start/End: Complemental strand, 12305432 - 12305343
Alignment:
Q  354 gaaccagattgttagtg-tttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||| ||||| |||| |||||| |||||  |||| ||||||||| || |||||||||||||||||||||||| ||||    
T  12305432 gaaccagattgttagtgatttccggaaactaaaatccggacaaatacgatatgaaatttttgtgtctttctttgatgtcaagggtatctg 12305343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 480044 - 480191
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||| ||||||| ||||| |||||||  | ||| ||||||| |  |||| |||| ||| ||||||||| | ||| ||| ||| |||||    
T  480044 tgccttctcgcgcgcc-tgcaaaaattccataaatacccctagtccggattacataatccggaccatattattagtgttttcggaatatataatccggac 480142  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||  ||||| | || |||||||||||||||||||||||||||||||    
T  480143 aaatatgatatggatattttgtgtctttctttgatgtcaagggtctctg 480191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 31318247 - 31318326
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    |||||||||||| || ||| ||||||| |||| ||||||||  ||||| |||||||||  |||| |||||||||||||||    
T  31318247 tgctgccttctcgcgtgccctgcaaaatttccgaaaatacccatggtccggattacgtaatccggaccagattgttagtg 31318326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 9305255 - 9305225
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  9305255 ttgtgtctttctttgatgtcaagggtctctg 9305225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 31271053 - 31271146
Alignment:
Q  277 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    |||||||| || |||||||||||||| |||||| ||||||| || | |||||| |  ||||  ||||||| |  |||| |||||||||||||||    
T  31271053 ttacttttcccacctgctgccttctcgcgcgccctgcaaaatttactaaaataaccctggttcggattacataatccggaccagattgttagtg 31271146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 440
Target Start/End: Original strand, 26791715 - 26791868
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| ||||||||| |||| | ||||||| ||||| |||||||  |||| ||||||||||  |||  |||||||||||||||||||| ||| ||| |||    
T  26791715 ccctgttgccttctcgcgcgtcctgcaaaaattccataaatacccctggtttggattacgtaatccagaccagattgttagtgtttccggaatatataat 26791814  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 440  Q
     |||||  |||| ||||||| || ||||||||||||||||||||||||||||||    
T  26791815 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctct 26791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 441
Target Start/End: Original strand, 37998394 - 37998543
Alignment:
Q  293 ctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcgga 392  Q
    ||||||||||||| ||| ||||||| ||| |||||||||  ||||||||||||| |  |||| || ||||||||||||||||| ||| ||| ||| ||||    
T  37998394 ctgccttctcacgtgccctgcaaaaattctaaaaatacccctggtctggattacataatccggactagattgttagtgtttccggaatatataatccgga 37998493  T
Q  393 cgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |  |||| ||||||| || |||||||||||||||||||||| ||||||||    
T  37998494 caaatacgatatgaatattttgtgtctttctttgatgtcaaaggtctctg 37998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 440
Target Start/End: Complemental strand, 38257840 - 38257695
Alignment:
Q  296 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgc 395  Q
    ||||||| || ||| ||||||| ||||| |||||||  ||||| |||||||||  | || |||||||||||||||||||| ||| ||| ||| |||||      
T  38257840 ccttctcgcgtgccctgcaaaaattccataaatacccctggtccggattacgtaattcggaccagattgttagtgtttccggaatatataatccggacaa 38257741  T
Q  396 atacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 440  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||    
T  38257740 atacgatatgaatattttgtgtctttctttgatgtcaagggtctct 38257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 15032957 - 15032803
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| |||||||||  ||||| ||||||| || || |||||||  ||||| |||||||||  |||| |||||||||||||||||| | ||| ||| |||    
T  15032957 ccctgttgccttctcgtgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatccggaccagattgttagtgtttgcagaatatataat 15032858  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      ||||  |||| | ||||| || |||||||||||||||||||||||||||||||    
T  15032857 atggacaaatacgacatgaatattttgtgtctttctttgatgtcaagggtctctg 15032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 7255809 - 7255661
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||  ||||||| ||||| |||||||  ||||  |||||||||  |||| |||| ||||||||||||| | ||| ||| ||| | |||    
T  7255809 tgccttctcgcgcgctctgcaaaaattccataaatacccctggttcggattacgtaatccggaccaaattgttagtgttttcggaatatataatccagac 7255710  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||| ||||||||||||||||||||||||    
T  7255709 aaatacgatatgaatattttgtgtatttctttgatgtcaagggtctctg 7255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 441
Target Start/End: Complemental strand, 35585469 - 35585322
Alignment:
Q  295 gccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa-ataaaattcggac 393  Q
    |||||||| || ||| ||||||| ||||| ||| |||  ||||| |||||| ||  |||  ||||||||||||||||||| ||||| ||| ||| |||||    
T  35585469 gccttctcgcgtgccctgcaaaaattccataaacacccctggtccggattatgtaatccagaccagattgttagtgtttc-tgaaatatacaatccggac 35585371  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||| ||||    
T  35585370 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtttctg 35585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 43457905 - 43457984
Alignment:
Q  291 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||||||||||||| ||||||| || |||||||||   ||||| ||||||  | |||||||||||||||||||||    
T  43457905 tgctgccttctcacgcgccctgcaaaattttcaaaaatactcctggtccggattatatattccgaaccagattgttagtg 43457984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 441
Target Start/End: Original strand, 108434 - 108576
Alignment:
Q  299 tctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcata 398  Q
    |||| |||||| || |||| || || ||||||| || |||  ||||||||  ||||||||||||||||||| ||||  ||| ||| ||| |||||  |||    
T  108434 tctcgcgcgccctgtaaaaatttcataaatacctttagtccagattacgtaatccgaaccagattgttagt-tttctggaatatataatccggacaaata 108532  T
Q  399 caatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    | ||||||| || |||||||||| ||||||||||||| ||||||    
T  108533 cgatatgaatattttgtgtctttatttgatgtcaaggatctctg 108576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 441
Target Start/End: Complemental strand, 29332627 - 29332542
Alignment:
Q  357 ccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||  || ||| ||| | |||  |||| ||||||| || |||||||||||||| ||||||||||||||||    
T  29332627 ccagattgttagtgtttccgaaatatataatccagacaaatacgatatgaatattttgtgtctttctttaatgtcaagggtctctg 29332542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 43749536 - 43749460
Alignment:
Q  359 agattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 434  Q
    ||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || |||||||||||||| |||||||||    
T  43749536 agattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttaatgtcaagg 43749460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 25529401 - 25529372
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctct 440  Q
    ||||||||||||||||||||||||||||||    
T  25529401 ttgtgtctttctttgatgtcaagggtctct 25529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 441
Target Start/End: Original strand, 17646895 - 17647067
Alignment:
Q  270 ttgagatttacttttaccccc-tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag 368  Q
    ||||||||||||||  || || ||||||||||||||||||| ||||||| || ||| ||||||  ||||| ||||| |||||||| ||||||||| ||||    
T  17646895 ttgagatttactttacccaccatgctgccttctcacgcgccctgcaaaaatttcaataatacccctggtccggatttcgttttccaaaccagatt-ttag 17646993  T
Q  369 tgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||| | ||||||||||| | |||||||||  || ||| ||  ||||||||||||| ||||||||||||||||    
T  17646994 tgttttcagaaaataaaatccagacgcatacgctacgaatattatgtgtctttctttaatgtcaagggtctctg 17647067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 16684654 - 16684506
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||||||||| |||||||| |||||||| ||||  |||||  |||| ||| ||||  |||||||||||||||||||| ||| | | ||| |||||    
T  16684654 tgccttctcacgcgctatgcaaaaattccaaaattacccctggtccagatttcgtattccataccagattgttagtgtttccggaacagataatccggac 16684555  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  16684554 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 16684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 438
Target Start/End: Complemental strand, 47986085 - 47985944
Alignment:
Q  298 ttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcat 397  Q
    ||||| |||||| || |||| ||||| |||||||  ||||| |||||||||  |||| ||||||||||||||| |||| ||| ||| ||| |||||  ||    
T  47986085 ttctcgcgcgccctggaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtgcttccggaatatataatccggacaaat 47985986  T
Q  398 acaatatgaa-atattgtgtctttctttgatgtcaagggtct 438  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  47985985 acaatatgaatattttgtgtctttctttgatgtcaagggtct 47985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 441
Target Start/End: Complemental strand, 40693390 - 40693242
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    |||||||||  ||||| || |||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  40693390 tgccttctcgtgcgccttgtaaaaattccataaatacctctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggac 40693291  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  40693290 aaatacgatatgaatattttgtgtctttccttgatgtcaaaggtctctg 40693242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 13721119 - 13721219
Alignment:
Q  342 attacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 440  Q
    |||||||  ||| ||||||||||||||||||||| ||| ||| ||| | |||  |||| ||||||| || ||||||||||||||||||||||||||||||    
T  13721119 attacgtaatccaaaccagattgttagtgtttccggaatatataatccagacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctct 13721218  T
Q  441 g 441  Q
    |    
T  13721219 g 13721219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 441
Target Start/End: Complemental strand, 52417355 - 52417201
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||||||||||| || ||| ||||||| || | ||||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||||   ||||    
T  52417355 ccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggaccagattgttagtgtttccggaaacagaaat 52417256  T
Q  388 tcggacgcatacaatatgaaa--tattgtgtctttctttgatgtcaagggtctctg 441  Q
     ||||| ||||   |||| ||  | || ||||||||||||||||||||||||||||    
T  52417255 ccggac-catatgttatgtaattttttatgtctttctttgatgtcaagggtctctg 52417201  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 38991003 - 38990912
Alignment:
Q  351 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||| |||||||||||||| |||   ||| ||| |||||||||  |||||||||||| || |||||||||||||||||||||||||||||||    
T  38991003 tccggaccagattgttagtatttatggaatatataattcggacaaatacaatatgaatattttgtgtctttctttgatgtcaagggtctctg 38990912  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 51888828 - 51888982
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||| |||||||||   |||| ||||||| || || ||||| | |||||| | |||||||  |||| || ||||||||||||||||| ||| ||| |||    
T  51888828 ccctgttgccttctcgtacgccctgcaaaaatttcataaatatctttggtccgaattacgtaatccggacgagattgttagtgtttccggaatatataat 51888927  T
Q  388 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
     |||||  |||| ||||||| || || ||||||||||||||||||| ||||||||    
T  51888928 ccggacaaatacgatatgaatattttttgtctttctttgatgtcaatggtctctg 51888982  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 45659871 - 45659774
Alignment:
Q  345 acgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
    |||| |||||||||||||||||||||||| | ||| ||| ||| | |||  ||||  |||||| || |||||||||||||||||||||||||||||||    
T  45659871 acgtattccgaaccagattgttagtgttttcggaatatataatccagacaaatacgctatgaatattttgtgtctttctttgatgtcaagggtctctg 45659774  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 441
Target Start/End: Original strand, 53511293 - 53511398
Alignment:
Q  337 tctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaaggg 435  Q
    ||||||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| |||| || || |||| | ||||||||||||||||||    
T  53511293 tctggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatattaatattttgtatttttctttgatgtcaaggg 53511392  T
Q  436 tctctg 441  Q
    ||||||    
T  53511393 tctctg 53511398  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 370
Target Start/End: Original strand, 16451634 - 16451733
Alignment:
Q  272 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    |||| |||||||| || ||||||||||||||| |||||  ||||||| || |||||||||| |||||||||||||  |  |||| |||||||||||||||    
T  16451634 gagaattacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtg 16451733  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 38551698 - 38551603
Alignment:
Q  276 tttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||  |  |||| |||||||||||||||    
T  38551698 tttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtg 38551603  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 440
Target Start/End: Original strand, 53269128 - 53269274
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||  || |||| ||||||||||| |  ||||| ||||||||| ||||||| |||||||||||||||||| ||| || | || || ||    
T  53269128 tgccttctcgcgcgctttgtaaaaattccaaaaatatccatggtccggattacgtattccgaatcagattgttagtgtttccggaacat-atatccgaac 53269226  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 440  Q
      |||  | ||||| || |||||||||||||||||||||| |||||||    
T  53269227 aaatatgacatgaatatcttgtgtctttctttgatgtcaatggtctct 53269274  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 437
Target Start/End: Original strand, 44107863 - 44108007
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| || ||| | ||||| |||||||| || |  |||||||||||  || ||||| |||||||||||||||||| | ||||  | ||| |||||    
T  44107863 tgccttctcgcgtgccctacaaaaattccaaaattatctctggtctggattttgtattccggaccagattgttagtgttttcggaaatgataatccggac 44107962  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtc 437  Q
      |||| ||||||| || |||| |||||||||||||| |||||||    
T  44107963 aaatacgatatgaatattttgtatctttctttgatgttaagggtc 44108007  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 35320324 - 35320230
Alignment:
Q  277 ttacttttaccccct-gctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 370  Q
    ||||||||||| ||| | ||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||  |  |||| |||||||||||||||    
T  35320324 ttacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtg 35320230  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 388
Target Start/End: Original strand, 11647586 - 11647686
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 387  Q
    ||||||||||||||  |||||  ||||||| || ||| ||||||  |||   ||||| ||||||  |||||||||||||||||||| | |||||||||||    
T  11647586 ccctgctgccttctagcgcgctctgcaaaaatttcaataatacccctggctcggatttcgttttttgaaccagattgttagtgttttcggaaaataaaat 11647685  T
Q  388 t 388  Q
    |    
T  11647686 t 11647686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 35158433 - 35158587
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag-tgtttcctgaaa-ataaa 385  Q
    ||||||||||| ||| |||||| ||||||| || | ||||||||  ||||| ||||||| |  |||| ||||||||||||| | ||||| |||| | |||    
T  35158433 ccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggaccagattgttagttatttccggaaacagaaa 35158532  T
Q  386 attcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctc 439  Q
    |||||||| || |   |||| ||| |  ||||||||||||||||||||||||||||    
T  35158533 attcggac-cagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 35158587  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 4047978 - 4048008
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  4047978 ttgtgtctttctttgatgtcaagggtctctg 4048008  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Original strand, 16451776 - 16451806
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  16451776 ttgtgtctttctttgatgtcaagggtctctg 16451806  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 38218565 - 38218535
Alignment:
Q  411 ttgtgtctttctttgatgtcaagggtctctg 441  Q
    |||||||||||||||||||||||||||||||    
T  38218565 ttgtgtctttctttgatgtcaagggtctctg 38218535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 393
Target Start/End: Original strand, 45924321 - 45924426
Alignment:
Q  290 ctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg--tttcctgaaaataaaat 387  Q
    ||||||||||||| |||||||||||||| ||  |||||||||  ||||| ||||||  |  |||| |||| ||||||||||  ||||| ||| || ||||    
T  45924321 ctgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtgattttccggaacattaaat 45924420  T
Q  388 tcggac 393  Q
    ||||||    
T  45924421 tcggac 45924426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 434
Target Start/End: Complemental strand, 55614275 - 55614117
Alignment:
Q  277 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcct 376  Q
    |||||||| | ||||| || |||||| |||||| || |||| ||||| |||||||  |||||  ||||||||  || | ||||||||||||||||||       
T  55614275 ttacttttccaccctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatg 55614176  T
Q  377 gaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 434  Q
    ||| ||  ||| |||||   ||| |||| || || ||||||||||||||||||||||||    
T  55614175 gaatatgtaatccggacaactacgatataaatattttgtgtctttctttgatgtcaagg 55614117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 16023714 - 16023743
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  16023714 tgtgtctttctttgatgtcaagggtctctg 16023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 28781067 - 28781038
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  28781067 tgtgtctttctttgatgtcaagggtctctg 28781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 30003452 - 30003481
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  30003452 tgtgtctttctttgatgtcaagggtctctg 30003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 43842174 - 43842145
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  43842174 tgtgtctttctttgatgtcaagggtctctg 43842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 45029317 - 45029288
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  45029317 tgtgtctttctttgatgtcaagggtctctg 45029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 45458056 - 45458137
Alignment:
Q  288 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagt 369  Q
    ||||||||||| ||| || ||| ||||||| || | |||||||| |||||| ||||||| |  ||||||||||||| |||||    
T  45458056 ccctgctgcctcctcgcgtgccttgcaaaatttactaaaatacccttggtccggattacataatccgaaccagattattagt 45458137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 51538486 - 51538515
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  51538486 tgtgtctttctttgatgtcaagggtctctg 51538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Complemental strand, 56463938 - 56463909
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  56463938 tgtgtctttctttgatgtcaagggtctctg 56463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 11924 - 12072
Alignment:
Q  294 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 393  Q
    ||||||||| |||||| ||||||| |||||||| ||||  ||||| ||||| ||| |||   || ||||||||||||||||| |||   | ||| |||||    
T  11924 tgccttctcgcgcgccctgcaaaaattccaaaattacccctggtccggatttcgtattcaagactagattgttagtgtttccggaaccgataatccggac 12023  T
Q  394 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 441  Q
      |||| ||||||| || |||||||||| ||||||||||| ||||||||    
T  12024 aaatacgatatgaatattttgtgtctttatttgatgtcaacggtctctg 12072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 441
Target Start/End: Original strand, 1502 - 1531
Alignment:
Q  412 tgtgtctttctttgatgtcaagggtctctg 441  Q
    ||||||||||||||||||||||||||||||    
T  1502 tgtgtctttctttgatgtcaagggtctctg 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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