View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6374_low_4 (Length: 440)

Name: NF6374_low_4
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6374_low_4
NF6374_low_4
[»] chr1 (15 HSPs)
chr1 (1-427)||(3378800-3379226)
chr1 (2-426)||(3372757-3373174)
chr1 (2-200)||(2006737-2006935)
chr1 (251-381)||(3361830-3361960)
chr1 (250-364)||(2019876-2019990)
chr1 (116-206)||(3341394-3341484)
chr1 (251-364)||(2006580-2006693)
chr1 (5-102)||(2012328-2012425)
chr1 (51-152)||(4334599-4334700)
chr1 (167-297)||(3341007-3341130)
chr1 (251-298)||(3340856-3340903)
chr1 (251-364)||(2010663-2010776)
chr1 (12-97)||(2010923-2011008)
chr1 (55-155)||(3362049-3362149)
chr1 (251-298)||(3349580-3349627)
[»] chr2 (7 HSPs)
chr2 (74-361)||(20953124-20953404)
chr2 (251-382)||(20927181-20927312)
chr2 (251-364)||(20923606-20923719)
chr2 (251-361)||(20934586-20934696)
chr2 (255-364)||(39274181-39274290)
chr2 (105-206)||(39274332-39274433)
chr2 (55-159)||(20927397-20927501)
[»] chr4 (1 HSPs)
chr4 (251-366)||(21237662-21237777)
[»] chr5 (1 HSPs)
chr5 (316-364)||(17969990-17970038)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 3379226 - 3378800
Alignment:
Q  1 tctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379226 tctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccacca 3379127  T
Q  101 attttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3379126 attttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttccaacaatgccaaatcttcaagtagagggcagccagatatca 3379027  T
Q  201 tgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379026 tgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtc 3378927  T
Q  301 gacagcaatataagcttaaatgacgtaaactttgacaagagaataagcaccatggtatcttataacattcctctatccaaacgctcagataaatctcttt 400  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3378926 gacaacaatataagcttaaatgacgtaaactttgacaagagaataagcaccatgttatcttataacattcctctatccaaacgctcagataaatctcttt 3378827  T
Q  401 tatagactttctggataggtgaagaat 427  Q
    ||||||||||| |||||||||||||||    
T  3378826 tatagactttcaggataggtgaagaat 3378800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 2 - 426
Target Start/End: Complemental strand, 3373174 - 3372757
Alignment:
Q  2 ctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaa 101  Q
    ||||||||| |||  ||| ||| ||||||| ||||||||||| ||||  ||  || |||| || |||||  |||| ||||||||||||||||||||  ||    
T  3373174 ctttgattgcttttggagttcagataaatacttaaatcaacatatactgtatatatttgggaactgttttgaaagctaatatcctcaaatttaccataaa 3373075  T
Q  102 ttttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcat 201  Q
     || ||||    | ||||||||||||||| |||||||||||| ||| ||||||| ||  | |||| ||||||  ||||||||||||||||||||||||||    
T  3373074 attgaaaagtactgagatttggtgcgtgaacattaatttgtgagaagccatcaattttcatcaataccaaatggtcaagtagagggcagccagatatcat 3372975  T
Q  202 gtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcg 301  Q
    |||||  ||  ||||||       |||||| ||||||| |||| |||  ||||  || ||  |||||||| ||||||||  |||||||| |||||||| |    
T  3372974 gttttcaaaatcatctt-------gagccagtgtaacctcttccagatgaagatattgcaggttcttgaaaccttcaaacgttgttggaagtttaagttg 3372882  T
Q  302 acagcaatataagcttaaatgacgtaaactttgacaagagaataagcaccatggtatcttataacattcctctatccaaacgctcagataaatctctttt 401  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||| | | | ||||||||||||| ||  |||| ||||| |  |||   || |||||||    
T  3372881 acaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatcttataacgtttgtctaaccaaaagtgcagcagaagctctttt 3372782  T
Q  402 atagactttctggataggtgaagaa 426  Q
    |||||| |||| ||||| |||||||    
T  3372781 atagaccttctagatagatgaagaa 3372757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 2006935 - 2006737
Alignment:
Q  2 ctttgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaa 101  Q
    ||||||||| |||||||| ||||||| | | |||||||||||||||||| |  |||||||||| ||||  ||||| |||||||||||||||||||||  |    
T  2006935 ctttgattgctttcagagttcaaatacaaacttaaatcaacaaatacataatctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacaga 2006836  T
Q  102 ttttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatca 200  Q
    | |  |||||||| |||||||||||||||   || ||||| ||||||||||||| |||   ||||| ||||| |||||| |||||||| | ||||||||    
T  2006835 tatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatcaagttctgtcaatgtcaaattttcaagcagagggcaactagatatca 2006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 381
Target Start/End: Complemental strand, 3361960 - 3361830
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||| | |||||| | |||   ||||||| ||||||||||||||||||||||||||    
T  3361960 aagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagcac 3361861  T
Q  351 catggtatcttataacattcctctatccaaa 381  Q
    || || |||||||| | ||| |||| |||||    
T  3361860 caagggatcttatagcgttcgtctaaccaaa 3361830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 364
Target Start/End: Complemental strand, 2019990 - 2019876
Alignment:
Q  250 taagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagca 349  Q
    ||||||||||||| ||||| ||||||||||   | | ||||||||||||   |||  || |||| |||| |||| |||| ||||||||||| ||||||||    
T  2019990 taagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaacaataagataaacttagatgaagtaagctttgacaagaaaataagca 2019891  T
Q  350 ccatggtatcttata 364  Q
    ||| |||||||||||    
T  2019890 ccaaggtatcttata 2019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 3341484 - 3341394
Alignment:
Q  116 agatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtttt 206  Q
    ||||||||||| |||  |||||| ||||| |||||||||| |||   ||||| ||| ||||||||||| ||||||| ||||||||||||||    
T  3341484 agatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatcatgtttt 3341394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 2006693 - 2006580
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    ||||||||| || ||||| ||||||||||   | | ||||||||||||   |||  |||||||  ||| |||| |||||||||||||||| |||||||||    
T  2006693 aagactttttaagttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcac 2006594  T
Q  351 catggtatcttata 364  Q
    || |||||||||||    
T  2006593 caaggtatcttata 2006580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 2012425 - 2012328
Alignment:
Q  5 tgattgatttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaat 102  Q
    |||||| |||||||| ||||| | | | |||||||||||| ||||| | ||||| || || ||||| ||||| |||||||||||||||||||| ||||    
T  2012425 tgattgctttcagagttcaaacacaaacttaaatcaacaattacataatttaataggtaagtgttttcaaagctaatatcctcaaatttaccaacaat 2012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 4334599 - 4334700
Alignment:
Q  51 tagttaattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaacc 150  Q
    |||||||||||||| |||| |||||| ||| | ||||||||| |||| | |||| ||||| ||| ||||||||||| |||  ||||||||| || |||||    
T  4334599 tagttaattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaacc 4334698  T
Q  151 at 152  Q
    ||    
T  4334699 at 4334700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 3341130 - 3341007
Alignment:
Q  167 gccaaatcttcaagtagagggcagccagatatcatgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattc 266  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||||       ||||||| |||| |||| ||    | |  ||||||||||||||||    
T  3341130 gccaattcttcaagcagagggcagccagatatcatgttttcaaatgca-------tcttgagtcattctaacgacagacaaagaaagacttttcaaattc 3341038  T
Q  267 ttgaagccttcaaatattgttggaggtttaa 297  Q
      ||||||||||||| |||||||||||||||    
T  3341037 cggaagccttcaaatgttgttggaggtttaa 3341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 3340903 - 3340856
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 298  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  3340903 aagacttttcaaattccggaagccttcaaatgttgttggaggtttaag 3340856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 2010776 - 2010663
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    |||||||||||| ||||| |||||| ||| | | | ||||||||||||   ||   || |||| |||| |||| |||| ||||||||||| |||||||||    
T  2010776 aagacttttcaagttcttaaagcctacaattgtcgatggaggtttaagcaaaccataagataaacttagatgaagtaagctttgacaagaaaataagcac 2010677  T
Q  351 catggtatcttata 364  Q
    || |||||||||||    
T  2010676 caaggtatcttata 2010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 2011008 - 2010923
Alignment:
Q  12 tttcagagctcaaataaatatttaaatcaacaaatacattagttaattggaaattgtttccaaagttaatatcctcaaatttacca 97  Q
    |||||||| ||||||| | | |||||||||||  ||||  |||||||| |||| |||||  |||| ||||||||||||||||||||    
T  2011008 tttcagagttcaaatacaaacttaaatcaacagctacacaagttaatttgaaagtgtttataaagctaatatcctcaaatttacca 2010923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 3362149 - 3362049
Alignment:
Q  55 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 154  Q
    |||| ||||| ||||| ||||| ||||||||||||||| |||||  || | |  |||||||||||||||| ||||   |||||||||  |||||||||||    
T  3362149 taatcggaaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatca 3362050  T
Q  155 a 155  Q
    |    
T  3362049 a 3362049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 3349627 - 3349580
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 298  Q
    ||||||||||| ||||  |||||||||||| |||||||||||||||||    
T  3349627 aagacttttcagattccggaagccttcaaaaattgttggaggtttaag 3349580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 361
Target Start/End: Complemental strand, 20953404 - 20953124
Alignment:
Q  74 aagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaat 173  Q
    ||||||||| ||||| |||  ||| ||||||  |||| ||| |||||||||||  ||  ||||||||| ||||||||||||||||| | ||||  ||| |    
T  20953404 aagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatcaacttctatcaatttcaatt 20953305  T
Q  174 cttcaagtagagggcagccagatatcatgtttttgaatgcatctttattcttgagccattgtaaccacttcaagactaagacttttcaaattcttgaagc 273  Q
     |||||| |||||||||||||| |||| |||||  || |||||||       |||||| ||| || |  |  |||  |||||| |||||  |||| ||||    
T  20953304 tttcaagcagagggcagccagagatcaagttttcaaaagcatctt-------gagccactgttactagattcagatcaagactcttcaacctcttaaagc 20953212  T
Q  274 cttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcaccatggtatctt 361  Q
    |||||||  | |||||||||||||| | ||| |||| |||  | |||||| |||||||||||||||||||||||||||| ||||||||    
T  20953211 cttcaaacgtcgttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20953124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 20927312 - 20927181
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    |||||| |||||| |||| |||| ||||||  | |||||||||||||| | ||| |||| |||  |||||||| ||||||||||||||||||||||||||    
T  20927312 aagactcttcaaactcttaaagctttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcac 20927213  T
Q  351 catggtatcttataacattcctctatccaaac 382  Q
    || ||||||||  |  || |||||||||||||    
T  20927212 caaggtatcttggagtatccctctatccaaac 20927181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 20923719 - 20923606
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    |||||||||||| ||| ||||||||||||| || | ||||||||||||   | | ||| | ||  |||||||| ||||||||||||||||||||||||||    
T  20923719 aagacttttcaagttcatgaagccttcaaacatcgctggaggtttaagcgaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcac 20923620  T
Q  351 catggtatcttata 364  Q
    || ||||| |||||    
T  20923619 caaggtatgttata 20923606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 361
Target Start/End: Complemental strand, 20934696 - 20934586
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    ||||||||||||  || | ||||||| ||| |  |||||||||||||| | |||| ||| |||  | |||||| ||||||||||||||||||||||||||    
T  20934696 aagacttttcaagctcctaaagcctttaaacaacgttggaggtttaagacaacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcac 20934597  T
Q  351 catggtatctt 361  Q
    || ||||||||    
T  20934596 caaggtatctt 20934586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 364
Target Start/End: Complemental strand, 39274290 - 39274181
Alignment:
Q  255 cttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcaccatg 354  Q
    |||||||| ||| |||||||||||||| |||||||||||||||| | ||| |||   ||  ||||| |  | ||||||||||| |||||||||||||| |    
T  39274290 cttttcaagttcctgaagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataagcaccaag 39274191  T
Q  355 gtatcttata 364  Q
    ||||||||||    
T  39274190 gtatcttata 39274181  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 39274433 - 39274332
Alignment:
Q  105 taaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatcaacttcgaacaatgccaaatcttcaagtagagggcagccagatatcatgtt 204  Q
    |||||| ||||||||||||||| |||  ||||| ||| || |||||||||  ||| | |||   ||||| |||||||||||||||||| |||||||| ||    
T  39274433 taaaaaacttcagatttggtgcatgaatattaacttgggttaaaccatcaggttctatcaaactcaaatattcaagtagagggcagccggatatcatttt 39274334  T
Q  205 tt 206  Q
    ||    
T  39274333 tt 39274332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 20927501 - 20927397
Alignment:
Q  55 taattggaaattgtttccaaagttaatatcctcaaatttaccaccaattttaaaaaccttcagatttggtgcgtgagcattaatttgtgtgaaaccatca 154  Q
    |||||||||| | ||| ||||||||||||||||| ||| ||||   ||||| |||| ||| |||||||||||  |   ||||| ||| ||||| ||||||    
T  20927501 taattggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 20927402  T
Q  155 acttc 159  Q
    |||||    
T  20927401 acttc 20927397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 21237777 - 21237662
Alignment:
Q  251 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacagcaatataagcttaaatgacgtaaactttgacaagagaataagcac 350  Q
    |||||||| ||| ||| |||||||||||||  |||||||||||||||| | ||| |    |||   ||||||| ||||||||||||||||||||||||||    
T  21237777 aagactttccaagttcctgaagccttcaaacgttgttggaggtttaagccaacaacttgttaattctaaatgatgtaaactttgacaagagaataagcac 21237678  T
Q  351 catggtatcttataac 366  Q
    || |||||||||||||    
T  21237677 caaggtatcttataac 21237662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 17970038 - 17969990
Alignment:
Q  316 ttaaatgacgtaaactttgacaagagaataagcaccatggtatcttata 364  Q
    |||||||| ||||||||||| |||| ||||||||||| |||||||||||    
T  17970038 ttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttata 17969990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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