View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6374_low_5 (Length: 400)
Name: NF6374_low_5
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6374_low_5 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0757 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 16097501 - 16097235
Alignment:
| Q |
19 |
aatagggagagccaaggaatggttattgtctctgccaagtgtaaccatacagacttgagagg--ttataacttaagtttcttcaagaggtttttcctatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16097501 |
aatagggagagccaaggaatggttattgtctctgccaagtgtaaccatacagacttgagaggagttataacttaagtttcttcaagaggtttttcctatg |
16097402 |
T |
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| Q |
117 |
tcaaagtattgggagaaaagacatgagctcacaaattttatgcaaggtgacggtgaatctctctatgatgcgtgggagaggttcaaactgttactaaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
16097401 |
tcaaagtattgggagaaaagacatgagctcacaaattttatgcaaggtgacggtgaatctctctatgatgcttgggagaggtttaaactgttactaaaaa |
16097302 |
T |
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| Q |
217 |
gatgaccaacccatgacttgggtgaaaaaacccagatgtaaatatttaccaaaagtttaaggcttaa |
283 |
Q |
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| T |
16097301 |
gatgaccaacccatgacttgggtgaaaaaacccagatgtaaatatttaccaaaagtttaaggcttaa |
16097235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 291 - 391
Target Start/End: Complemental strand, 16097154 - 16097054
Alignment:
| Q |
291 |
catagctcaaaatgagtatcgtgccgagaccgagcgaggcaagagaggggtatttggtataagtgaaaatagtgctatcttggccaaccaaaagttgatg |
390 |
Q |
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| T |
16097154 |
catagctcaaaatgagtatcgtgccgagaccgagcgaggcaagagaggggtatttggtgtaagtgaaaatagtgctatcttggccaaccaaaagttgatg |
16097055 |
T |
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| Q |
391 |
a |
391 |
Q |
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| T |
16097054 |
a |
16097054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 38624566 - 38624700
Alignment:
| Q |
85 |
aacttaagtttcttcaagaggtttttcctatgtcaaagtattgggagaaaagacatgagctcacaaattttatgcaaggtgacggtgaatctctctatga |
184 |
Q |
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||||||||||||| || ||| | ||||||||| |||| ||||||||||||||||| || |||| || |||| ||| || || ||||||||| || | |
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| T |
38624566 |
aacttaagtttctcca-gagatctttcctatgccaaaatattgggagaaaagacaagaaatcaccaactttaggcagggagagtctgaatctcttcataa |
38624664 |
T |
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| Q |
185 |
tgcgtgggagaggttcaaactgttactaaaaagatg |
220 |
Q |
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||| |||||||||||||| |||||| |||| ||||| |
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| T |
38624665 |
tgcttgggagaggttcaagctgttattaaagagatg |
38624700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 19863528 - 19863490
Alignment:
| Q |
171 |
gaatctctctatgatgcgtgggagaggttcaaactgtta |
209 |
Q |
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| T |
19863528 |
gaatctctctatgatgcttgggagaggttcaaactgtta |
19863490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 64542 - 64579
Alignment:
| Q |
172 |
aatctctctatgatgcgtgggagaggttcaaactgtta |
209 |
Q |
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| T |
64542 |
aatctctctatgatgcttgggagaggttcaaactgtta |
64579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0757 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0757
Description:
Target: scaffold0757; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 5988 - 6026
Alignment:
| Q |
171 |
gaatctctctatgatgcgtgggagaggttcaaactgtta |
209 |
Q |
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| T |
5988 |
gaatctctctatgatgcttgggagaggttcagactgtta |
6026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 12815896 - 12815844
Alignment:
| Q |
283 |
attgagagcatagctcaaaatgagtatcgtgccgagaccgagcgaggcaagag |
335 |
Q |
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||||||| ||| |||||||||| | ||||||||||||||||||| || ||||| |
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| T |
12815896 |
attgagaacatggctcaaaatgcgaatcgtgccgagaccgagcgtggtaagag |
12815844 |
T |
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