View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6374_low_6 (Length: 251)

Name: NF6374_low_6
Description: NF6374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6374_low_6
NF6374_low_6
[»] chr1 (18 HSPs)
chr1 (9-251)||(3379357-3379599)
chr1 (17-137)||(3362460-3362580)
chr1 (17-169)||(3373416-3373568)
chr1 (20-136)||(4334196-4334312)
chr1 (59-136)||(4322347-4322424)
chr1 (23-127)||(2007223-2007327)
chr1 (71-136)||(3341995-3342060)
chr1 (23-127)||(2012706-2012810)
chr1 (10-129)||(1793451-1793570)
chr1 (17-131)||(3217778-3217892)
chr1 (17-134)||(6601015-6601132)
chr1 (23-127)||(2011209-2011313)
chr1 (23-123)||(2020466-2020566)
chr1 (60-131)||(3193366-3193437)
chr1 (60-131)||(3202184-3202255)
chr1 (60-131)||(3211021-3211092)
chr1 (31-140)||(2947732-2947841)
chr1 (39-131)||(6591754-6591846)
[»] chr2 (4 HSPs)
chr2 (17-131)||(20953718-20953832)
chr2 (17-137)||(20935174-20935294)
chr2 (18-137)||(20924173-20924292)
chr2 (98-131)||(39274720-39274753)
[»] chr4 (1 HSPs)
chr4 (17-137)||(21238223-21238343)
[»] chr5 (1 HSPs)
chr5 (61-137)||(17970509-17970585)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 3379599 - 3379357
Alignment:
Q  9 agcatagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  3379599 agcaaagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatc 3379500  T
Q  109 acctgcagccaaatactgaagcaaaacaggagggcgtcactaattgagtatatattgtttttgatactttacaaatcaagagattcatattatatctata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3379499 acctgcagccaaatactgaagcaaaacaggagggcgtcactaaatgagtatatattgtttttgatactttacaaatcaagagattcatattatatctgta 3379400  T
Q  209 ggggccgggagtagggattaaacaagaattaggttagtcactc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3379399 ggggccgggagtagggattaaacaagaattaggttagtcactc 3379357  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3362580 - 3362460
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    |||||| |||||| ||||||| ||| ||||| ||| |||||||||||||  || |||| |||||||||||| |||||||||| ||| ||| |||||||||    
T  3362580 gcagccaaaattttcttcaagtcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcag 3362481  T
Q  117 ccaaatactgaagcaaaacag 137  Q
    |||||||||||||||||||||    
T  3362480 ccaaatactgaagcaaaacag 3362460  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 3373568 - 3373416
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||||| | ||  ||   ||||||||||| ||||||||||||||| |||||| ||||||    
T  3373568 gcagctgaaatttccttcaagtcattgaagtttatgcataaggaaagctcacataggctgatacaaggtgcaggaagctttactggcacatcatctgcag 3373469  T
Q  117 ccaaatactgaagcaaaacaggagggcgtcactaattgagtatatattgtttt 169  Q
    ||||||||| || ||||| || ||  ||||||||| | || ||||| ||||||    
T  3373468 ccaaatactaaaacaaaatagaagaacgtcactaaatcagaatataatgtttt 3373416  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 4334196 - 4334312
Alignment:
Q  20 gccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagcca 119  Q
    ||||||||||||| || |  || |||||||||   |||||||||| |||| ||||  |||||||||||||||||||||||||| | | ||||||||||||    
T  4334196 gccgaaatttcctccatgttatcgaagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagcca 4334295  T
Q  120 aatactgaagcaaaaca 136  Q
    |||||||||||| ||||    
T  4334296 aatactgaagcataaca 4334312  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 4322347 - 4322424
Alignment:
Q  59 gaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaaca 136  Q
    |||||| |||| ||||| |||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||    
T  4322347 gaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaaca 4322424  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2007327 - 2007223
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||| ||| ||| |||||||||||  ||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||||||||    
T  2007327 gaaatttccttaaagtcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaat 2007228  T
Q  123 actga 127  Q
    |||||    
T  2007227 actga 2007223  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 3342060 - 3341995
Alignment:
Q  71 agatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaaca 136  Q
    |||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||    
T  3342060 agattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaatactgaggcaaaaca 3341995  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2012810 - 2012706
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    |||||||| |||||| | | ||||||||||| |||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  2012810 gaaatttctttcaagtcgtagaagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaat 2012711  T
Q  123 actga 127  Q
    |||||    
T  2012710 actga 2012706  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 1793570 - 1793451
Alignment:
Q  10 gcatagggcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatca 109  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| | |||  |||||||  | | || ||||||||||||||||||| ||  ||| ||| ||    
T  1793570 gcatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaaca 1793471  T
Q  110 cctgcagccaaatactgaag 129  Q
    |||||||  |||||||||||    
T  1793470 cctgcagataaatactgaag 1793451  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 3217778 - 3217892
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    |||||| ||||||  |||||| |||||||  |||| |||| | ||||| |||| | || |||||||||||| ||||| ||||| || ||||||||||||     
T  3217778 gcagccaaaatttgtttcaagtcattgaaccttatgcatatgaaaagagaacttaaattgatacaaggtgtcggaagttttaccggcacatcacctgcat 3217877  T
Q  117 ccaaatactgaagca 131  Q
    |||||||||||||||    
T  3217878 ccaaatactgaagca 3217892  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 6601015 - 6601132
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    ||||| |||||||||||  |  ||| ||||||||| | || |||||||||||| ||||| || ||||| ||||||||||||||||||||| | ||   ||    
T  6601015 gcagctgaaatttcctttgaatcatagaagtttatgcgtatggaaagataacttagatcaatgcaaggggtaggaagctttactggtacagcccccagag 6601114  T
Q  117 ccaaatactgaagcaaaa 134  Q
    |||||||||| |||||||    
T  6601115 ccaaatactggagcaaaa 6601132  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 2011313 - 2011209
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||||||  ||||||||||||||| |||  | ||| |  | ||||  |||||||||||||||||||||| ||| ||| |||||||||| ||||    
T  2011313 gaaatttccttcaactcattgaagtttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaat 2011214  T
Q  123 actga 127  Q
    |||||    
T  2011213 actga 2011209  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 2020566 - 2020466
Alignment:
Q  23 gaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaat 122  Q
    ||||||||||| ||| ||| |||||||||||  ||  |||||||  | ||||  |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  2020566 gaaatttccttaaagtcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaat 2020467  T
Q  123 a 123  Q
    |    
T  2020466 a 2020466  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3193366 - 3193437
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3193366 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3193437  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3202184 - 3202255
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3202184 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3202255  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3211021 - 3211092
Alignment:
Q  60 aaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| |||| |||| ||||||| |||| ||||||||||| || |||||||||||| ||||||||| |||||    
T  3211021 aaagaaaacttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatacttaagca 3211092  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 2947732 - 2947841
Alignment:
Q  31 cttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagc 130  Q
    ||||||| ||||||||||||| || ||| ||| | | || |||| || |||  |||||||||| ||| |||| ||   ||||| ||||||||||| ||||    
T  2947732 cttcaagtcattgaagtttatccacaagcaaatagatcttagattgacacacagtgtaggaagtttttctggcacgatacctgtagccaaatactaaagc 2947831  T
Q  131 aaaacaggag 140  Q
    ||||||||||    
T  2947832 aaaacaggag 2947841  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 6591754 - 6591846
Alignment:
Q  39 cattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagca 131  Q
    ||||||||||||| |||| ||||| |||||| ||||| || ||  | |||||||||| |||||| ||| | |||  |||||||||||| ||||    
T  6591754 cattgaagtttatgcatatggaaatataacttagatcaatgcaccgggtaggaagctctactggcacaacccctaaagccaaatactggagca 6591846  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 20953832 - 20953718
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    ||||||||||||||||| | |   | ||||||||| |||||||||||||| || ||||  |||||||||||||||||||||||||| | | |||||||||    
T  20953832 gcagccgaaatttcctttaggttgtcgaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcag 20953733  T
Q  117 ccaaatactgaagca 131  Q
    |||||||||||||||    
T  20953732 ccaaatactgaagca 20953718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 20935294 - 20935174
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    ||||||||||||||||||||| ||| ||||||||| |  |||||||||| ||| ||||| |||||||||||||||||||||  ||| | | |||||||||    
T  20935294 gcagccgaaatttccttcaagtcatcgaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcag 20935195  T
Q  117 ccaaatactgaagcaaaacag 137  Q
     || |||||||||| ||||||    
T  20935194 tcagatactgaagcgaaacag 20935174  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 20924292 - 20924173
Alignment:
Q  18 cagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagc 117  Q
    |||||||||||||| ||||| | ||||||||||  |||| ||||||| |  | ||||  |||||| ||||||||||||||||||| ||  ||||||||||    
T  20924292 cagccgaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccacacctgcagc 20924193  T
Q  118 caaatactgaagcaaaacag 137  Q
    ||||||||||||||||||||    
T  20924192 caaatactgaagcaaaacag 20924173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 39274753 - 39274720
Alignment:
Q  98 actggtacatcacctgcagccaaatactgaagca 131  Q
    ||||| ||||||||||||||||||||||||||||    
T  39274753 actggcacatcacctgcagccaaatactgaagca 39274720  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 21238343 - 21238223
Alignment:
Q  17 gcagccgaaatttccttcaagacattgaagtttatacataaggaaagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcag 116  Q
    |||||||| |||||||||||| |||||||||||||   |||  ||||||  || ||||  |||||||||||||||||||||||||| ||  |||||||||    
T  21238343 gcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagatggcttagatgaatacaaggtgtaggaagctttactggaacgacacctgcag 21238244  T
Q  117 ccaaatactgaagcaaaacag 137  Q
    ||||||||||||||| |||||    
T  21238243 ccaaatactgaagcagaacag 21238223  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 17970585 - 17970509
Alignment:
Q  61 aagataactcagatcgatacaaggtgtaggaagctttactggtacatcacctgcagccaaatactgaagcaaaacag 137  Q
    |||| |||| ||||| |||  |||||| ||||||| |||||| |||  ||||||||||||||||| |||||||||||    
T  17970585 aagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatactaaagcaaaacag 17970509  T

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