View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6375_high_7 (Length: 271)
Name: NF6375_high_7
Description: NF6375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6375_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 29609518 - 29609780
Alignment:
| Q |
1 |
taatgtctggtgtccgtgtctgtgttttgtatctgacaatccttgatgattcattttattaacagaacttgtgttaatg--tactgtagaacctattttt |
98 |
Q |
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| T |
29609518 |
taatgtctggtgtccgtgtctgtgttttgtaactgacaatccttgatgattcattttattaacagaacttgtgttaatacctactgtagaacctattttt |
29609617 |
T |
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| Q |
99 |
tccacaaagattccctactatttcatttagcaggtaaaaggcaccatatgatacaaatatatcctaagcactcaagtgcttcactccaagaattcatctc |
198 |
Q |
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| T |
29609618 |
tccacaaagattccctactatttcatttagcaggtaaaaggcaccatatgatacaaatatatcctaagcactcaagtgcttcactccaagaattcatctt |
29609717 |
T |
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| Q |
199 |
gatttaaattaaatactaatatatcctaagcacccaagtgcttcacgcctgcattcccctttg |
261 |
Q |
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| T |
29609718 |
gatttaaattaaatactaatatatcctaagcacccaagtgcttcacgcctgcattcccctttg |
29609780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 29585222 - 29585166
Alignment:
| Q |
171 |
caagtgcttcactccaagaattcatctcgatttaaattaaatactaatatatcctaa |
227 |
Q |
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| T |
29585222 |
caagtgcttcactgcaaacattcaccttcatttaaattaaatactattatatcctaa |
29585166 |
T |
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