View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6375_low_1 (Length: 696)
Name: NF6375_low_1
Description: NF6375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6375_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 19 - 689
Target Start/End: Complemental strand, 41086358 - 41085688
Alignment:
| Q |
19 |
ccaacaacctcaatggacaaatccaattcaaagtggaaaccacacattgaaatagctcctaattgtcctcgttgcgcttcatcaaacaccaaattctgtt |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086358 |
ccaacaacctcaatggacaaatcaaattcaaagtggaaaccacacattgaaatagctcctaattgtcctcgttgcgcttcatcaaacaccaaattctgtt |
41086259 |
T |
|
| Q |
119 |
actacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcggaatgttcctgttggtgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086258 |
actacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcggaatgttcctgttggtgg |
41086159 |
T |
|
| Q |
219 |
tggctgccgcaaaaaccgccgtggaaaggcggtcagaaattctcatgccgaccgtctttccgcgaattatggctctgctgacgatgaagatcatcagcaa |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086158 |
tggctgccgcaaaaaccgtcgtggaaaggcggtcagaaattctcagactgaccgtctttccgcgaattatggctctgctgacgatgaagatcatcagcaa |
41086059 |
T |
|
| Q |
319 |
aaccaaaacaatggttcccgcgatatagatatggctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086058 |
aaccaaaacaatggttcccgcgatatagatatggctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattgg |
41085959 |
T |
|
| Q |
419 |
aaattgagagtgaggttaataataatggactgtcttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085958 |
aaattgagagtgaggttaataataatggactgtcttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgc |
41085859 |
T |
|
| Q |
519 |
agtggtccagcctcataaaccttttgatgaggttcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggttt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085858 |
agtggtccagcctcataaaccttttgatgaggttcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggttt |
41085759 |
T |
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| Q |
619 |
ctaggtgttgatgaagatgtggtacaagatgttctatggcctgattctaatgctatgaatatgatgatgtc |
689 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41085758 |
ctaggtgttgatgaagatgtggtacaagatgttctatggcctgattctaatgctatgaatatgatgatgtc |
41085688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 34976256 - 34976172
Alignment:
| Q |
104 |
acaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaagg |
188 |
Q |
| |
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||||||||||||| ||||||||||||||||| | || |||||| |||| || ||||| ||||||| | |||||||||||||| |
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| T |
34976256 |
acaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattggaccaaagg |
34976172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 24878860 - 24878994
Alignment:
| Q |
100 |
tcaaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttc |
199 |
Q |
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|||||||| |||||||| |||||||| || |||||||| | || ||| | |||||||||||||| || ||| | |||||||| |||||||| || || |
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| T |
24878860 |
tcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattggacaaaaggtggatccctca |
24878959 |
T |
|
| Q |
200 |
ggaatgttcctgttggtggtggctgccgcaaaaac |
234 |
Q |
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| T |
24878960 |
gaaatgttcctgttggtggtggctgcagaaaaaac |
24878994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 3945989 - 3945865
Alignment:
| Q |
97 |
tcatcaaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctc |
196 |
Q |
| |
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||||||||||| || || |||||||||||||| ||||| ||||| || ||| | |||| || |||| ||| | |||||||||||| | |||||| ||| |
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| T |
3945989 |
tcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtggtactc |
3945890 |
T |
|
| Q |
197 |
ttcggaatgttcctgttggtggtgg |
221 |
Q |
| |
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|| | |||||||||||||||||||| |
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| T |
3945889 |
ttagaaatgttcctgttggtggtgg |
3945865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 39741065 - 39741196
Alignment:
| Q |
103 |
aacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcgga |
202 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| | | |||||| | ||||| |||||| ||| ||| | ||||||||||||||||| | | ||| |
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| T |
39741065 |
aacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagga |
39741164 |
T |
|
| Q |
203 |
atgttcctgttggtggtggctgccgcaaaaac |
234 |
Q |
| |
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||||||||||||| ||||| ||| | |||||| |
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| T |
39741165 |
atgttcctgttggaggtggatgcagaaaaaac |
39741196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 458
Target Start/End: Complemental strand, 23939648 - 23939535
Alignment:
| Q |
342 |
tatagatatggctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattggaaattgagagtgaggttaataat |
441 |
Q |
| |
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|||||| |||||| ||||||| |||||| | ||||||||||||| || |||||||||||||||| || |||| |||||||||| ||||| | | ||| |
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| T |
23939648 |
tatagacatggctcttgtttttgccaaaattttaaaccaaaatctaa---gtactcatcatggtgacaagaaattagaaattgagattgaggctcacaat |
23939552 |
T |
|
| Q |
442 |
aatggactgtcttcttc |
458 |
Q |
| |
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|||| |||||||||| |
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| T |
23939551 |
aatgagatgtcttcttc |
23939535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 8132150 - 8132030
Alignment:
| Q |
101 |
caaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcg |
200 |
Q |
| |
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||||||| || ||||| ||||||||||| |||| | || || ||||| ||||||||||| |||| | ||||||||||| |||||||| | ||||| |
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| T |
8132150 |
caaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaaaggtggtgcacttcg |
8132051 |
T |
|
| Q |
201 |
gaatgttcctgttggtggtgg |
221 |
Q |
| |
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|| ||||||||||| ||||| |
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| T |
8132050 |
aaacgttcctgttggaggtgg |
8132030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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