View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6375_low_2 (Length: 595)
Name: NF6375_low_2
Description: NF6375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6375_low_2 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 73816 - 73391
Alignment:
| Q |
11 |
agaatatatttccattacttgtttcatttttgcagttgttcttatatttattttatagaacatgttacataccaatataaatcattatttttagtctttt |
110 |
Q |
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| T |
73816 |
agaatatatttccattacttgtttcatttttgcagttgttcttatatttattttatagaacatgttacataccaatataaatcattatttttagtctttt |
73717 |
T |
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| Q |
111 |
ttaagtggtttctaacaagtttatttaacgattatatgatttgagcaaatgg--ttgcctattgatctacatttgagatttatgcttctttacggtaagc |
208 |
Q |
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| T |
73716 |
ttaagtggtttataacaagtttatttaacgattatatgatttgagcaaatgggtttacctattgatccacatttgagatttatgcttctttacggtaagc |
73617 |
T |
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| Q |
209 |
tttgattctagtttgtatatatgctaaatcttagagatatattttttgtaaaaattagtaattaagctcaaggatttaattcannnnnnnnnnnnnnnnn |
308 |
Q |
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| T |
73616 |
tttgattctagttcgtatatatgctaaatcttagagatatattttttgtaaaaattagtaattaagctcaaggatttaattcatttttttatatttattt |
73517 |
T |
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| Q |
309 |
nnctctgcagaaaaacgcaaggatttgaattgattgaatacattggtgtgctcttcatcatgggactcattctgccatatcttgtgcaccgatcataaaa |
408 |
Q |
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| T |
73516 |
ttctctgcagaaaaacgcaaggatttgaattgattgaatacattggtgtgctcttcatcatgggactcattctgccatatattgtgcaccgatcataaaa |
73417 |
T |
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| Q |
409 |
aataaatgctaatattttatctagaa |
434 |
Q |
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| T |
73416 |
aataaatgctaatattttatctagaa |
73391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 526 - 582
Target Start/End: Complemental strand, 73268 - 73212
Alignment:
| Q |
526 |
gacatctcaaatggataaaccaaaccatctttgtagaaaatgaattatgttgttact |
582 |
Q |
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| T |
73268 |
gacatctcaaatggataaaccaaaccatctttgtagaaaatgaattatgttgttact |
73212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 16806089 - 16806148
Alignment:
| Q |
11 |
agaatatatttccattacttgtttcatttttgcagttgttcttatatttattttatagaa |
70 |
Q |
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| T |
16806089 |
agaatatatttccattacttaatttatttatgcaaatgttcttatatttattttatagaa |
16806148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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