View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6375_low_3 (Length: 513)
Name: NF6375_low_3
Description: NF6375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6375_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 3324032 - 3324523
Alignment:
| Q |
20 |
gattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatccaataaacttttcaat |
119 |
Q |
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| T |
3324032 |
gattatcatgctattttttcatgtttgagaattgaaaagcacacctctgcttaattaattcttcaagatgatctgatatgcatccaataaacttttcaat |
3324131 |
T |
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| Q |
120 |
gaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatgcaaaaatagcttcgacacttcagattaaaagcatatcaca |
219 |
Q |
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| T |
3324132 |
gaattcatagcaggataatattttttcctcaaacagaagcccttcagtctgcttcaaatacaaaaatagcttcgacacttcagattaaaagtatatcaca |
3324231 |
T |
|
| Q |
220 |
tgcccgacaagtgttccaacaccgacacaacgcttttacatgtataatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtc |
319 |
Q |
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| T |
3324232 |
tgtccgacaagtgttccaacaccgacacaacgccgttacatg--taatcagttctattttctcaaattattactgaagtctacatgttagtatcagtgtc |
3324329 |
T |
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| Q |
320 |
gtgtttgacgtttgtgccgatgtttaatttattgtcatgtgcataa--------aatacaacaatacttgtatgcaaaatttaatggtgaaaagagaatg |
411 |
Q |
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| T |
3324330 |
gtgtttgacgtttgtgccgatatttaatttattgtcatgtgcataatatgaatcaatacaacaatacttgtatgcaaaatttaatggtgaaaagagaata |
3324429 |
T |
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| Q |
412 |
ttacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcttctc |
505 |
Q |
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| T |
3324430 |
ttacccttttatatgcatcataatcatgtccactcctaagaagctcagcaatgtcattcttcgtaaacttctgaatagctcttctcttcttctc |
3324523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 8013863 - 8013924
Alignment:
| Q |
265 |
aatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtttg |
326 |
Q |
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||||| || |||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
8013863 |
aatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttg |
8013924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 1116428 - 1116368
Alignment:
| Q |
264 |
taatcagttctattttctcaaattattactaaagtctgcatgttagtatcagtgtcgtgtt |
324 |
Q |
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| T |
1116428 |
taatcacttcaattttctcaaattattaccaatgtctacatgttagtgtcagtgttgtgtt |
1116368 |
T |
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