View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6375_low_6 (Length: 274)
Name: NF6375_low_6
Description: NF6375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6375_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 34549136 - 34548927
Alignment:
| Q |
51 |
tgctttatttttatcctataaaaataaaaatgactactacta---tctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaaagcaaca |
147 |
Q |
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| T |
34549136 |
tgctttatttttatcctataaaaataaaaatcactactactactatctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaa-gcaaca |
34549038 |
T |
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| Q |
148 |
acaacattatgaaaagatgatggaacatggcaacacatggaaaatttatataaatgtctcacgtgacacatgttaccacttgaacattgtattttgttga |
247 |
Q |
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| T |
34549037 |
acaacattatgaaaagatgatggaacatggcaaaacatggaaaatttatataaatgtctcacgtgacacatgttaccacttgaacattgtattttgttga |
34548938 |
T |
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| Q |
248 |
tcaacaaatgc |
258 |
Q |
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| T |
34548937 |
tcaacaaatgc |
34548927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 46469827 - 46469720
Alignment:
| Q |
55 |
ttatttttatcctataaaaataaaaatgactactactatctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaaagcaacaacaacat |
154 |
Q |
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|||||||||||||||||||| ||||| ||||| |||| ||| ||| | ||||||||||||||||| |||| ||| |||||| ||||||| ||||| |
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| T |
46469827 |
ttatttttatcctataaaaa---aaatg-ctactcctattttttaaagagccaaatttaatgtacacacttttt--aaggtagaaa-gcaacaataacat |
46469735 |
T |
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| Q |
155 |
tatgaaaagatgatg |
169 |
Q |
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| T |
46469734 |
tatgaaaagatgatg |
46469720 |
T |
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