View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6376_high_3 (Length: 305)
Name: NF6376_high_3
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 4531970 - 4532247
Alignment:
| Q |
9 |
agcacagatattgaaggtgaacaaccaatttgtggcacaaaggcgcgtgaaaccaaatttgaacaactagcagggtttgtgccaccaatctaccacagac |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4531970 |
agcacacatattgaaggtgaacaaccaatttgtggcacaaaggcgcgtgaaaccgaatttgaacaactagcaaggtttgtgccaccaatctaccacagac |
4532069 |
T |
|
| Q |
109 |
cagacacccacagctgcctctcaaaggactatgattgtcctccaagaacagttgtccatgcaaaggtacaacgaccaaatcctcaaacctccattattgg |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4532070 |
cagacacccacaactgcctctcaaaggactatgattgtccttcaagaacagttgttcatgcaaaggtacaaggaccaaatcctcaaacctccattattgg |
4532169 |
T |
|
| Q |
209 |
ctcatatacatgggtcagatacattcactctgtgcaaatagtgtatcatcttatgccactcactgacttgagcgccat |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4532170 |
ctcatatacatgggtcagatacattcactctatacaaatagtgtatcatcttatgtcactcactgacttgagcgccat |
4532247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 49191626 - 49191551
Alignment:
| Q |
126 |
ctctcaaaggactatgattgtcctccaagaacagttgtccatgcaaaggtacaacgaccaaatcctcaaacctcca |
201 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| ||||||| | |||||||||| |||||| |||| ||||||||| |
|
|
| T |
49191626 |
ctctcaaaggaccatgattgtccttctagaacaattgtccacgtaaaggtacaaggaccaagtccttaaacctcca |
49191551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University