View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6376_high_4 (Length: 299)
Name: NF6376_high_4
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 26442974 - 26443181
Alignment:
| Q |
17 |
aaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagttctaaattaagatctgcatcaacaattgtattgctcaatttttctc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26442974 |
aaacaatcaccctttaatgtccataaatgtcttataattacatgtgaaaaaagttctaaattaagatctgcatcaacaattgtattgctcaatttttctc |
26443073 |
T |
|
| Q |
117 |
tataaatattggttcaaatttcaccatttcatattcattcaaagaattcagaattatttccacatgtcgtaacgtaagttgtatatgatcgtggttctgg |
216 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26443074 |
tataaatattgtttcaactttcaccatttcatattcattcaaagaattcataattatttccacatgtcggaacgtaagttgtatatgatcgtggttctgg |
26443173 |
T |
|
| Q |
217 |
taaaaagg |
224 |
Q |
| |
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|||||||| |
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|
| T |
26443174 |
taaaaagg |
26443181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 37242795 - 37243003
Alignment:
| Q |
17 |
aaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagttctaaattaagatctgcatcaacaattgtattgctcaatttttctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37242795 |
aaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaagttctaaattaagatcagcatcaacaattgtattgctcaatttttctt |
37242894 |
T |
|
| Q |
117 |
tataaatattggttcaaatttcaccatttcatattcattcaaagaattcagaa-ttatttccacatgtcgtaacgtaagttgtatatgatcgtggttctg |
215 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| || |
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| T |
37242895 |
tataaatattgtttcaactttcaccatttcatattcattcaaagaattcagaatttttttccacatgccgtaacgtaagttgtatatgatcgtggttttg |
37242994 |
T |
|
| Q |
216 |
gtaaaaagg |
224 |
Q |
| |
|
||||||||| |
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|
| T |
37242995 |
gtaaaaagg |
37243003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 20348121 - 20347984
Alignment:
| Q |
17 |
aaacaatcaccctttaatgtccataaatgtcttataattacgtgtgaaaaaa-gttctaaattaagatctgcatcaacaattgtattgctcaatttttct |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20348121 |
aaacaatcaccctttaatgtctataaatgtcttataaatacgtgtgaaaaaaagttctaaattaagatctgcatcaacaattgtattgctcaatttttct |
20348022 |
T |
|
| Q |
116 |
ctataaatattggttcaaatttcaccatttcatattca |
153 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20348021 |
ctataaatattggttcacctttcaccatttcatattca |
20347984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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