View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6376_high_7 (Length: 269)
Name: NF6376_high_7
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 4129911 - 4129670
Alignment:
| Q |
18 |
caatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagtaaact |
117 |
Q |
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| T |
4129911 |
caatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagtaaact |
4129812 |
T |
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| Q |
118 |
catataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgccaaattgattacttggatc |
217 |
Q |
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| T |
4129811 |
catataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggatc |
4129712 |
T |
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| Q |
218 |
tatcaacgaataaccataaggacatttacaagtaggtctctg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129711 |
tatcaacgaataaccataaggacatttacaagtaggtctctg |
4129670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 4106725 - 4106483
Alignment:
| Q |
17 |
acaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacatctctaagaacagtaaac |
116 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| ||||||| ||||| | |||||||||||||| |
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| T |
4106725 |
acaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctgataatggccaattcacatttgtaagaacagtaaac |
4106626 |
T |
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| Q |
117 |
tcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgccaaattgattacttggat |
216 |
Q |
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||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4106625 |
tcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaaattgagttgacacccgccaaattgattacttggat |
4106526 |
T |
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| Q |
217 |
ctatcaacgaataaccataaggacatttacaagtaggtctctg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4106525 |
ctatcaacgaataaccataaggacatttacaagtaggtctctg |
4106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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