View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6376_low_1 (Length: 495)

Name: NF6376_low_1
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6376_low_1
NF6376_low_1
[»] chr5 (10 HSPs)
chr5 (165-480)||(9221578-9221885)
chr5 (173-396)||(19997118-19997342)
chr5 (12-122)||(9221424-9221534)
chr5 (173-341)||(27075875-27076044)
chr5 (12-122)||(19997385-19997495)
chr5 (43-85)||(6116061-6116103)
chr5 (397-478)||(35650297-35650378)
chr5 (284-332)||(24541224-24541272)
chr5 (54-118)||(27076095-27076159)
chr5 (47-75)||(15458186-15458214)
[»] chr7 (12 HSPs)
chr7 (173-369)||(366725-366922)
chr7 (173-343)||(7401946-7402117)
chr7 (15-122)||(366966-367073)
chr7 (15-122)||(13034945-13035052)
chr7 (21-113)||(7402169-7402261)
chr7 (50-104)||(25972574-25972628)
chr7 (273-332)||(29996515-29996574)
chr7 (53-104)||(46867167-46867218)
chr7 (439-472)||(30760310-30760343)
chr7 (398-474)||(676038-676114)
chr7 (247-314)||(13018117-13018185)
chr7 (328-396)||(23168171-23168239)
[»] chr4 (11 HSPs)
chr4 (15-122)||(7149817-7149924)
chr4 (397-466)||(38865268-38865337)
chr4 (47-122)||(4613793-4613868)
chr4 (243-340)||(27385469-27385567)
chr4 (43-104)||(9591145-9591206)
chr4 (426-468)||(29079375-29079417)
chr4 (50-85)||(50132271-50132306)
chr4 (45-79)||(4613868-4613902)
chr4 (50-104)||(44973249-44973303)
chr4 (173-265)||(7149671-7149764)
chr4 (271-371)||(10542581-10542681)
[»] chr3 (11 HSPs)
chr3 (165-338)||(23876872-23877044)
chr3 (173-358)||(25535149-25535335)
chr3 (63-122)||(23876776-23876835)
chr3 (50-103)||(7590095-7590148)
chr3 (50-104)||(5126593-5126647)
chr3 (50-104)||(5133848-5133902)
chr3 (50-104)||(41624505-41624559)
chr3 (47-79)||(7590060-7590092)
chr3 (273-332)||(2660276-2660335)
chr3 (273-332)||(3152239-3152298)
chr3 (348-385)||(36035885-36035922)
[»] chr2 (8 HSPs)
chr2 (173-397)||(26584717-26584942)
chr2 (15-113)||(4046562-4046660)
chr2 (15-122)||(26584565-26584672)
chr2 (277-341)||(4046351-4046415)
chr2 (165-249)||(20940873-20940957)
chr2 (43-85)||(40151499-40151541)
chr2 (289-340)||(6786018-6786069)
chr2 (289-340)||(37020564-37020615)
[»] chr1 (9 HSPs)
chr1 (173-371)||(42559812-42560011)
chr1 (180-331)||(3370969-3371121)
chr1 (15-101)||(42559649-42559735)
chr1 (47-103)||(35009124-35009180)
chr1 (53-104)||(23172317-23172368)
chr1 (50-104)||(43869460-43869514)
chr1 (66-122)||(3370855-3370911)
chr1 (273-340)||(33602645-33602712)
chr1 (273-332)||(46583557-46583616)
[»] chr8 (11 HSPs)
chr8 (173-332)||(11788385-11788545)
chr8 (53-113)||(11788595-11788655)
chr8 (328-397)||(11719446-11719515)
chr8 (289-340)||(15305853-15305904)
chr8 (289-340)||(15486222-15486273)
chr8 (273-332)||(27691218-27691277)
chr8 (273-332)||(38547292-38547351)
chr8 (45-75)||(9185817-9185847)
chr8 (213-313)||(11722749-11722850)
chr8 (47-75)||(10268713-10268741)
chr8 (47-75)||(11032293-11032321)
[»] scaffold0722 (1 HSPs)
scaffold0722 (325-396)||(4903-4974)
[»] scaffold0058 (2 HSPs)
scaffold0058 (273-332)||(3358-3417)
scaffold0058 (273-332)||(4530-4589)
[»] chr6 (2 HSPs)
chr6 (273-332)||(13613583-13613642)
chr6 (50-104)||(31209534-31209588)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 165 - 480
Target Start/End: Original strand, 9221578 - 9221885
Alignment:
Q  165 tttgtagtgtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcacta 264  Q
    |||| ||||||||||||||||||||||||||| |||||||||||   |||     |||||||||||||||||||||||||||||||||||||||||||||    
T  9221578 tttgcagtgtttccatcaaattgatctgtgtatacgtggatgac---atg-----tggacaacacagcacaacatgtaggacgacacgtcagcctcacta 9221669  T
Q  265 acgggggattggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatcctt 364  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9221670 acaggggattgaatggagggatgaatttgatggatgtctgttaaattcagaagctaatttgatatttcaaaaaattgggagacgaatttgactgatcctt 9221769  T
Q  365 acaaatttaaagacgaatttgggaatttactcgacacaaaaaatatgtggtagatcctactattaaattggttacaccatcattaataatttttaagatt 464  Q
     |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9221770 gcaaatttaaagacgaatttggatatttactcgacacaaaaaataggtggtagatcctattattaaattggttacaccatcattaataatttttaagatt 9221869  T
Q  465 ttttatgtttatatat 480  Q
    ||||||||||||||||    
T  9221870 ttttatgtttatatat 9221885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 173 - 396
Target Start/End: Complemental strand, 19997342 - 19997118
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacg-gggg 271  Q
    ||||||||||||||  ||  ||||||||||| |||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||  |||    
T  19997342 gtttccatcaaattattcattgtacacgtggctgactggatgacacgttgacatcacagcacaacatgcaggacgacacgtcagcctcactaacgaaggg 19997243  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatccttacaaatt 371  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||  |||||||||||||  ||||||| |  || |||||||  || ||||||||||||    
T  19997242 attggacggaaggatgaatttgatgaatgtctgttaaattcaggaagtaatttgatattttgaaaaatttggggacgaatttggatggtccttacaaatt 19997143  T
Q  372 taaagacgaatttgggaatttactc 396  Q
     || ||| ||||| || ||||||||    
T  19997142 caaggacaaatttaggtatttactc 19997118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 9221424 - 9221534
Alignment:
Q  12 atgaaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggt 111  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9221424 atgaaatcgatcaaattggtccctagatttctaaaattttcaatcaaatcagtccctaaattattacggttactgtcaaattgatccttaaaagaggggt 9221523  T
Q  112 aacagaggaaa 122  Q
    |||||||||||    
T  9221524 aacagaggaaa 9221534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 173 - 341
Target Start/End: Complemental strand, 27076044 - 27075875
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacggggg- 271  Q
    ||||||||||||||| ||  | ||||||||| |||||  ||||| |||||||| || |||||| |||| |||| ||||||||| |||||||||||||||     
T  27076044 gtttccatcaaattggtccttatacacgtggctgactaaatgacacgtggacatcaaagcacatcatgcaggatgacacgtcaacctcactaacgggggg 27075945  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattg 341  Q
    |||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||||||    
T  27075944 attgaacggagggatgaatttgatggacgtctgttaaattcaggaactaatttgatattttgaaaaattg 27075875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 19997495 - 19997385
Alignment:
Q  12 atgaaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggt 111  Q
    |||||||||||||||| ||| || | |||||||||| ||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19997495 atgaaatcgatcaaatcagtcccaaaatttctaaaaatttcaatcaaatgtgtccctaaattattacaattactatcaaattgatccttaaaagaggggt 19997396  T
Q  112 aacagaggaaa 122  Q
    || ||| ||||    
T  19997395 aaaagacgaaa 19997385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 6116103 - 6116061
Alignment:
Q  43 taaaattttcaatcaaatcagtccctaaattattacagttact 85  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  6116103 taaaattttcaatcaaatcagtccctaaattattacacttact 6116061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 35650378 - 35650297
Alignment:
Q  397 gacacaaaaaatatgtggtagatcctactattaaattggttacaccatcattaataatttttaagattttttatgtttatat 478  Q
    ||||||||||||| ||||| | ||||| ||||||||   || ||||||||||||| ||||||||  ||||||||||||||||    
T  35650378 gacacaaaaaataggtggtgggtcctattattaaatgaatttcaccatcattaattatttttaaatttttttatgtttatat 35650297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 24541224 - 24541272
Alignment:
Q  284 gatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||||||||||||| |||||| |||||||||  |||||||||||||||    
T  24541224 gatgaatttgatggacgtctgtaaaattcagggactaatttgatatttc 24541272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 27076159 - 27076095
Alignment:
Q  54 atcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaacagag 118  Q
    ||||||||| |||||  ||||||||| ||||| ||||||  ||||||||||||||||||| ||||    
T  27076159 atcaaatcaatccctggattattacaattactatcaaatctatccttaaaagaggggtaaaagag 27076095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 15458186 - 15458214
Alignment:
Q  47 attttcaatcaaatcagtccctaaattat 75  Q
    |||||||||||||||||||||||||||||    
T  15458186 attttcaatcaaatcagtccctaaattat 15458214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 173 - 369
Target Start/End: Complemental strand, 366922 - 366725
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacgg-ggg 271  Q
    ||||||||||||||| ||  | ||||||||| |||| |||||||  ||||||| |||| ||||||||| |  |||||| ||||||||||||||||| |||    
T  366922 gtttccatcaaattggtccttctacacgtggctgacgggatgacatgtggacatcacaacacaacatgcataacgacatgtcagcctcactaacggtggg 366823  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatccttacaaa 369  Q
    |||||| ||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||| ||   ||  |||||||||||| ||||||||    
T  366822 attggacggagggatgaatttgatagacgtctgttaaattcagggactaatttgatatttcaaaaaactgagggacaaatttgactgattcttacaaa 366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 173 - 343
Target Start/End: Complemental strand, 7402117 - 7401946
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacgg-ggg 271  Q
    |||||| |||||||| ||| ||||||||||| |||||||||||| |||| |||||||||||||||||| ||  || ||| ||||| |||||||||| |      
T  7402117 gtttccgtcaaattggtctttgtacacgtggctgactggatgacgcgtgtacaacacagcacaacatgaagagcggcacctcagcatcactaacggagat 7402018  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattgga 343  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||  | ||||||||||||| | ||||||||    
T  7402017 attggatggagtgatgaatttgatggacgtctgttaaattcagggacgaatttgatatttcgataaattgga 7401946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 367073 - 366966
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaac 114  Q
    ||||||||||||| ||| | || ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  367073 aaatcgatcaaataagtccataaatttctaaatttttcaatcaaataagtccctaaattattacagttactatcaaattgatccttaaaagaggggtaaa 366974  T
Q  115 agaggaaa 122  Q
    ||||||||    
T  366973 agaggaaa 366966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 13035052 - 13034945
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaac 114  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||     
T  13035052 aaatcgatcaaatcagtccctagatttctcaaattttcaatcaaatgagtccctaaattattatagttactatcaaattgatccttaaaggaggggtaaa 13034953  T
Q  115 agaggaaa 122  Q
    ||||||||    
T  13034952 agaggaaa 13034945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 7402261 - 7402169
Alignment:
Q  21 atcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaa 113  Q
    ||||||||||| | || ||||||  || |||||||  |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  7402261 atcaaattagtccttaaatttcttcaactttcaatataatcagtccctaaattattacacttactatcaaatcgatccttaaaagaggggtaa 7402169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 25972574 - 25972628
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    |||||||||||||||||||||||||||||| |||||  |||||||||| ||||||    
T  25972574 ttcaatcaaatcagtccctaaattattacacttactagcaaattgatcattaaaa 25972628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 29996515 - 29996574
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||||||||||| |||||||||||| |||||| |||||||||   ||||||||||||||    
T  29996515 ttggatggagggacgaatttgatggacgtctgtaaaattcagggattaatttgatatttc 29996574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 46867167 - 46867218
Alignment:
Q  53 aatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    |||||||| |||||||||||||||||| |||||  |||||||||||||||||    
T  46867167 aatcaaatgagtccctaaattattacacttactagcaaattgatccttaaaa 46867218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 30760310 - 30760343
Alignment:
Q  439 caccatcattaataatttttaagattttttatgt 472  Q
    ||||||||||||| ||||||||||||||||||||    
T  30760310 caccatcattaattatttttaagattttttatgt 30760343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 676038 - 676114
Alignment:
Q  398 acacaaaaaatatgtggtagatcctactattaaattggttacaccatcattaataatttttaagattttttatgttt 474  Q
    ||||||||||||||||||   |||||  |||||||  ||  ||||||||||||| ||||| |||||||||| |||||    
T  676038 acacaaaaaatatgtggtgattcctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgttt 676114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 13018185 - 13018117
Alignment:
Q  247 gacacgtcagcctcactaacgggg-gattggatggagggatgaatttgatggatgtctgttaaattcag 314  Q
    |||| ||||||||||||||||| | ||||||| |||||||  | ||||||||| || ||||||||||||    
T  13018185 gacatgtcagcctcactaacggagtgattggacggagggaccattttgatggacgtatgttaaattcag 13018117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 23168239 - 23168171
Alignment:
Q  328 atttcaaaaaattggaagatgaatttgactgatccttacaaatttaaagacgaatttgggaatttactc 396  Q
    ||||||||||||| ||||| |||||||||||||| ||  ||||| || |||||| ||||  ||||||||    
T  23168239 atttcaaaaaatttgaagaagaatttgactgatcgttgaaaattcaatgacgaacttggatatttactc 23168171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 7149924 - 7149817
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaac 114  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||     
T  7149924 aaatcgatcaaatcagtccctagatttctaaaatttccaatcaaatcagtctctaaattattacagttactatcaaatcgatccttaaaagaggggtaat 7149825  T
Q  115 agaggaaa 122  Q
    ||||||||    
T  7149824 agaggaaa 7149817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 466
Target Start/End: Complemental strand, 38865337 - 38865268
Alignment:
Q  397 gacacaaaaaatatgtggtagatcctactattaaattggttacaccatcattaataatttttaagatttt 466  Q
    ||||||||||||||||||||| |||||| ||||||| |||| || |||||||||| ||||| ||||||||    
T  38865337 gacacaaaaaatatgtggtaggtcctaccattaaataggttccagcatcattaattattttcaagatttt 38865268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 4613868 - 4613793
Alignment:
Q  47 attttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaacagaggaaa 122  Q
    |||||||||||||||||||| |||||||||||| |||||  ||||| ||||||||||  | |||||| ||||||||    
T  4613868 attttcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaatcaagggtaaaagaggaaa 4613793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 27385567 - 27385469
Alignment:
Q  243 ggacgacacgtcagcctcactaacgggg-gattggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    ||||||||| ||||||||||| |||| | ||||||| ||| |||||||||||||| ||| || ||||||||||    |||||||||||||||| |||||    
T  27385567 ggacgacacatcagcctcactgacggagagattggacggatggatgaatttgatgaatgcctattaaattcagagattaatttgatatttcaacaaatt 27385469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 9591145 - 9591206
Alignment:
Q  43 taaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    |||||| ||||||||||| |||||||||||||||||| |||||  ||||| |||||||||||    
T  9591145 taaaatattcaatcaaataagtccctaaattattacacttactagcaaatcgatccttaaaa 9591206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 29079375 - 29079417
Alignment:
Q  426 attaaattggttacaccatcattaataatttttaagatttttt 468  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  29079375 attaaattggttccaccatcattaattatttttaagatttttt 29079417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 50132306 - 50132271
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttact 85  Q
    |||||||||||||||||||||||||||||| |||||    
T  50132306 ttcaatcaaatcagtccctaaattattacacttact 50132271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 4613902 - 4613868
Alignment:
Q  45 aaattttcaatcaaatcagtccctaaattattaca 79  Q
    ||||||||||||||||| |||||||||||||||||    
T  4613902 aaattttcaatcaaatcggtccctaaattattaca 4613868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 44973303 - 44973249
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||| ||||| |||||||||||| |||||  ||||| |||||||||||    
T  44973303 ttcaatcaaataagtccttaaattattacacttactagcaaatcgatccttaaaa 44973249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 7149764 - 7149671
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgt-ggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaa 265  Q
    |||||||| |||||| ||  ||||||||| || ||||| |||||| |||| |||  ||| ||||||||| || |||||| ||||||||||||||    
T  7149764 gtttccattaaattggtccttgtacacgtaggttgactagatgacacgtgtacaggacaacacaacatgcagaacgacatgtcagcctcactaa 7149671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 10542681 - 10542581
Alignment:
Q  271 gattggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatccttacaaat 370  Q
    ||||||| |||||||| ||||||||||| ||  |||| ||| | |  |||||||| |||||| | |||||  ||||  ||||||| ||||||||||||||    
T  10542681 gattggacggagggataaatttgatggacgttcgttagatttaaggactaatttgctatttcgacaaattaaaagacaaatttgattgatccttacaaat 10542582  T
Q  371 t 371  Q
    |    
T  10542581 t 10542581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 165 - 338
Target Start/End: Original strand, 23876872 - 23877044
Alignment:
Q  165 tttgtagtgtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcacta 264  Q
    |||||| ||||| |||||||||| ||  |||||  |||| ||||| |||||| | |||||| |||| ||||| |||||||||||||||| ||||||||||    
T  23876872 tttgtaatgttttcatcaaattggtccttgtac--gtggctgactagatgacacatggacatcacaacacaaaatgtaggacgacacgttagcctcacta 23876969  T
Q  265 acgg-gggattggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaa 338  Q
    |||| ||||||||| |||||||||||||||||||| || ||||||||||||   |||||||||||||||||||||    
T  23876970 acggagggattggacggagggatgaatttgatggacgtttgttaaattcagagactaatttgatatttcaaaaaa 23877044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 173 - 358
Target Start/End: Original strand, 25535149 - 25535335
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacgg-ggg 271  Q
    ||||||||||||||| ||  |||| ||||||  ||||||||||| |||||||| |||| || | |||||||||||||||||||||||  |||| || |||    
T  25535149 gtttccatcaaattggtccttgtagacgtggccgactggatgacacgtggacatcacaacaaagcatgtaggacgacacgtcagccttgctaatggaggg 25535248  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactg 358  Q
     ||||| ||||||||||||||| |||| ||||||||||||||||  |||| || ||||||| |||||||||  |  |||||||||||    
T  25535249 gttggacggagggatgaatttggtggacgtctgttaaattcagggactaacttaatatttcgaaaaattggggggcgaatttgactg 25535335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 23876776 - 23876835
Alignment:
Q  63 gtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaacagaggaaa 122  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||    
T  23876776 gtccctaaattattacagttactatcaaatcaatccttaaaagaggggtaaaagaggaaa 23876835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 7590095 - 7590148
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaa 103  Q
    |||||||||||||||||||||||||||||| |||||  ||||| ||||||||||    
T  7590095 ttcaatcaaatcagtccctaaattattacacttactagcaaatcgatccttaaa 7590148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 5126647 - 5126593
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||||||||| |||||||||||| |||||  ||||| |||||||||||    
T  5126647 ttcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaa 5126593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 5133902 - 5133848
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||||||||| |||||||||||| |||||  ||||| |||||||||||    
T  5133902 ttcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaa 5133848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 41624559 - 41624505
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    |||||||||||||| ||||||||||||||| || ||  |||||||||||||||||    
T  41624559 ttcaatcaaatcagcccctaaattattacatttgcttgcaaattgatccttaaaa 41624505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 7590060 - 7590092
Alignment:
Q  47 attttcaatcaaatcagtccctaaattattaca 79  Q
    |||||||||||||||||||||||||||||||||    
T  7590060 attttcaatcaaatcagtccctaaattattaca 7590092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 2660335 - 2660276
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| ||||||| |||||||||||| |||||| ||||||| |  |||||||||||||||    
T  2660335 ttggacggagggacgaatttgatggacgtctgtaaaattcaaggactaatttgatatttc 2660276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 3152239 - 3152298
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| ||||||| | |||||||||| |||||| |||||||||  |||||||||||||||    
T  3152239 ttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttc 3152298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 36035885 - 36035922
Alignment:
Q  348 gaatttgactgatccttacaaatttaaagacgaatttg 385  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  36035885 gaatttgactaatccttgcaaatttaaagacgaatttg 36035922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 173 - 397
Target Start/End: Original strand, 26584717 - 26584942
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaac-ggggg 271  Q
    ||||||||||||||  ||  ||||||||||| |||||||||||  |||||||| |||| ||||||||| ||||||||||||||||||||||| | | |||    
T  26584717 gtttccatcaaattcgtcattgtacacgtggctgactggatgatacgtggacatcacaacacaacatgcaggacgacacgtcagcctcactaccagaggg 26584816  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatccttacaaatt 371  Q
    | |||| |||||||||||||||||||| |||| ||||||| |||   |||||||||||||  |||| |||   || ||||||| || |||||   |||||    
T  26584817 aatggacggagggatgaatttgatggacgtctattaaattgagggattaatttgatattttgaaaacttgagggacgaatttggctaatcctagtaaatt 26584916  T
Q  372 taaagacgaatttgggaatttactcg 397  Q
     || |||||||||||| |||||||||    
T  26584917 caaggacgaatttgggtatttactcg 26584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 4046660 - 4046562
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaa 113  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
T  4046660 aaatcgatcaaatgaggccctagatttctaaaattttcaatcaaatcagtcccaaaattattacagttactatcaaattgatccttaaaagagtggtaa 4046562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 26584565 - 26584672
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaac 114  Q
    ||||||||||||| | | ||||||||| |||| |||| |||||||| |||||||||||||||||||||| | |||||| |||||||||||||||| |||     
T  26584565 aaatcgatcaaatcaatccctagatttttaaattttttaatcaaattagtccctaaattattacagttaatatcaaatcgatccttaaaagagggataaa 26584664  T
Q  115 agaggaaa 122  Q
    ||||||||    
T  26584665 agaggaaa 26584672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 4046415 - 4046351
Alignment:
Q  277 atggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattg 341  Q
    |||||||||||||||||||||| | |||||||||| ||   ||||||||||||||||||||||||    
T  4046415 atggagggatgaatttgatggacgactgttaaatttagagactaatttgatatttcaaaaaattg 4046351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 20940957 - 20940873
Alignment:
Q  165 tttgtagtgtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgac 249  Q
    ||||| ||||||||||||||||| ||  ||||||||||  | |||||||||| |||| ||||||||||||| |||| ||||||||    
T  20940957 tttgttgtgtttccatcaaattggtcattgtacacgtgtctaactggatgacacgtgtacaacacagcacatcatgcaggacgac 20940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 40151499 - 40151541
Alignment:
Q  43 taaaattttcaatcaaatcagtccctaaattattacagttact 85  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  40151499 taaaattttcaatcaaatcagtccctaaattattacacttact 40151541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 6786018 - 6786069
Alignment:
Q  289 atttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    |||||||||| |||||| |||||||||  |||||||||||||||||| ||||    
T  6786018 atttgatggacgtctgtaaaattcagggactaatttgatatttcaaataatt 6786069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 37020615 - 37020564
Alignment:
Q  289 atttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    |||||||||| |||||  |||||||||  |||||||||||||||||||||||    
T  37020615 atttgatggacgtctgcaaaattcagggactaatttgatatttcaaaaaatt 37020564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 173 - 371
Target Start/End: Original strand, 42559812 - 42560011
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaac-ggggg 271  Q
    |||||||||||| || ||  ||||||| ||| ||||||||| || |||||||| |||| |||||||||||||||||| | |||||||||||||| | | |    
T  42559812 gtttccatcaaaatggtccttgtacacatggctgactggataacacgtggacatcacaacacaacatgtaggacgacgcatcagcctcactaacagagag 42559911  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaattggaagatgaatttgactgatccttacaaatt 371  Q
    |||||| |||||||||||||||||||| ||||||||| || ||   | ||||| ||||||| | |||||||| |||  |||||| || ||||| ||||||    
T  42559912 attggacggagggatgaatttgatggacgtctgttaattttagagacaaatttaatatttcgataaattggaggatatatttgattggtccttgcaaatt 42560011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 331
Target Start/End: Original strand, 3370969 - 3371121
Alignment:
Q  180 tcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacgg-gggattggat 278  Q
    |||||||||||  ||||||||||| |||||||||| | |||||||| ||||  ||||||||||||||||||  ||| ||||||||| || |||||||||     
T  3370969 tcaaattgatccttgtacacgtggctgactggatggcacgtggacatcacaatacaacatgtaggacgacatatcaacctcactaatggagggattggac 3371068  T
Q  279 ggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatattt 331  Q
     |||||||||  ||||||||||||| |||||||||   |||||||||||||||    
T  3371069 agagggatgaggttgatggatgtctattaaattcaatggctaatttgatattt 3371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 42559649 - 42559735
Alignment:
Q  15 aaatcgatcaaattagtacctagatttctaaaattttcaatcaaatcagtccctaaattattacagttactgtcaaattgatcctta 101  Q
    ||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||    
T  42559649 aaatcgatcaaataagtccctaaacttctaaaattttcaatcaaatcagtccctaaattattatacttactatcaaatcgatcctta 42559735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 35009180 - 35009124
Alignment:
Q  47 attttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaa 103  Q
    ||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||    
T  35009180 attttcaataaaatcagtccctaaattataacacttactatcaaatcgatccttaaa 35009124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 23172368 - 23172317
Alignment:
Q  53 aatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||||||||||||||||||| |||||  ||||| |||||||||||    
T  23172368 aatcaaatcagtccctaaattattacacttactagcaaatcgatccttaaaa 23172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 43869514 - 43869460
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||||||||| |||||||||||| |||||  ||||| |||||||||||    
T  43869514 ttcaatcaaatcagtccttaaattattacacttactagcaaatcgatccttaaaa 43869460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 3370855 - 3370911
Alignment:
Q  66 cctaaattattacagttactgtcaaattgatccttaaaagaggggtaacagaggaaa 122  Q
    ||||||||||||| ||||| || |||||||||||||||||  |||||| ||||||||    
T  3370855 cctaaattattacggttaccgtaaaattgatccttaaaaggtgggtaaaagaggaaa 3370911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 33602645 - 33602712
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    ||||| |||||||  ||||||| ||| |||||| |||||||||  |||||||||||||||| ||||||    
T  33602645 ttggacggagggactaatttgacggacgtctgtaaaattcagggactaatttgatatttcacaaaatt 33602712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 46583557 - 46583616
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| |||||||  ||||||||||| |||||| |||||||||  |||||||||||||||    
T  46583557 ttggacggagggacaaatttgatggacgtctgtaaaattcagggactaatttgatatttc 46583616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 11788545 - 11788385
Alignment:
Q  173 gtttccatcaaattgatctgtgtacacgtggatgactggatgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacggggg- 271  Q
    ||||||||||||||| ||  ||||||| ||| |||||  ||||| |||| |||| ||| ||||||||  | || ||||| ||||| |||||||| | |      
T  11788545 gtttccatcaaattggtccttgtacacatggctgactatatgacacgtgtacaaaacaacacaacatacaagaagacacctcagcatcactaacagagat 11788446  T
Q  272 attggatggagggatgaatttgatggatgtctgttaaattc-aggagctaatttgatatttc 332  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||| | |||||||||||||    
T  11788445 attggacggagggatgaatttgatggacgtctgttaaattcgagga-caaatttgatatttc 11788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 11788655 - 11788595
Alignment:
Q  53 aatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaagaggggtaa 113  Q
    |||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||    
T  11788655 aatcaaatcagtccctaaattagttcacttactatcaaattgatccttaaaagaggggtaa 11788595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 11719515 - 11719446
Alignment:
Q  328 atttcaaaaaattggaagatgaatttgactgatccttacaaatttaaagacgaatttgggaatttactcg 397  Q
    ||||||| ||||||||||| |||||||| || ||||| |||||| ||||||||| || || |||||||||    
T  11719515 atttcaataaattggaagacgaatttgattggtccttgcaaattcaaagacgaactttggtatttactcg 11719446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 15305904 - 15305853
Alignment:
Q  289 atttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    |||||||||| |||||| |||||||||  |||||||||||||||||| ||||    
T  15305904 atttgatggacgtctgtaaaattcagggactaatttgatatttcaaataatt 15305853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 15486273 - 15486222
Alignment:
Q  289 atttgatggatgtctgttaaattcaggagctaatttgatatttcaaaaaatt 340  Q
    |||||||||| |||||| |||||||||  |||||||||||||||||| ||||    
T  15486273 atttgatggacgtctgtaaaattcagggactaatttgatatttcaaataatt 15486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 27691277 - 27691218
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| ||||||| | |||||||||| |||||| |||||||||  |||||||||||||||    
T  27691277 ttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttc 27691218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 38547351 - 38547292
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    |||||||||||||  | ||||||||| |||||| |||||||||  |||||||||||||||    
T  38547351 ttggatggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttc 38547292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 9185847 - 9185817
Alignment:
Q  45 aaattttcaatcaaatcagtccctaaattat 75  Q
    |||||||||||||||||||||||||||||||    
T  9185847 aaattttcaatcaaatcagtccctaaattat 9185817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 11722749 - 11722850
Alignment:
Q  213 tgactcgtggacaacacagcacaacatgtaggacgacacgtcagcctcactaacgggggat-tggatggagggatgaatttgatggatgtctgttaaatt 311  Q
    |||| |||| |||||||| ||||||||| | |||||||  ||||| ||| ||| || | || |||| ||||||||||||||||| || || |||||||||    
T  11722749 tgacacgtgtacaacacaacacaacatgcaagacgacatatcagcatcagtaatggagcatctggacggagggatgaatttgattgacgtttgttaaatt 11722848  T
Q  312 ca 313  Q
    ||    
T  11722849 ca 11722850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 10268741 - 10268713
Alignment:
Q  47 attttcaatcaaatcagtccctaaattat 75  Q
    |||||||||||||||||||||||||||||    
T  10268741 attttcaatcaaatcagtccctaaattat 10268713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 11032293 - 11032321
Alignment:
Q  47 attttcaatcaaatcagtccctaaattat 75  Q
    |||||||||||||||||||||||||||||    
T  11032293 attttcaatcaaatcagtccctaaattat 11032321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 4903 - 4974
Alignment:
Q  325 gatatttcaaaaaattggaagatgaatttgactgatccttacaaatttaaagacgaatttgggaatttactc 396  Q
    |||||||| | |||||| | ||||||||||  ||||||||||||||| || |||||||||||| ||||||||    
T  4903 gatatttcgacaaattgaaggatgaatttggttgatccttacaaattcaaggacgaatttgggtatttactc 4974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 3417 - 3358
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| ||||||| |||||||||||| |||||| |||||||||  |||||||||||||||    
T  3417 ttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttc 3358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 4589 - 4530
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| ||||||| |||||||||||| |||||| |||||||||  |||||||||||||||    
T  4589 ttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttc 4530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 13613583 - 13613642
Alignment:
Q  273 ttggatggagggatgaatttgatggatgtctgttaaattcaggagctaatttgatatttc 332  Q
    ||||| |||||||  ||||||||||| |||||| |||||||||  |||||||||||||||    
T  13613583 ttggacggagggactaatttgatggacgtctgtaaaattcagggactaatttgatatttc 13613642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 31209588 - 31209534
Alignment:
Q  50 ttcaatcaaatcagtccctaaattattacagttactgtcaaattgatccttaaaa 104  Q
    ||||||||||||||||| |||||||||||| ||||   ||||| |||||||||||    
T  31209588 ttcaatcaaatcagtccttaaattattacacttaccagcaaatcgatccttaaaa 31209534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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