View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6376_low_5 (Length: 290)
Name: NF6376_low_5
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 31132924 - 31132836
Alignment:
| Q |
15 |
ttttccattatggatgttgatagcttagctgaatgcaaaacagtatgaatccacacaccaacaccaaattcaaattaaaaagatttccat |
104 |
Q |
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| T |
31132924 |
ttttccattatggatgttgatagcttagctgaatgcaaaaaagtatgaatccacacaccaacacccaattcaaatt-aaaagatttccat |
31132836 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 31132734 - 31132658
Alignment:
| Q |
203 |
tatcctacacgtccttacattttcttttgggtgcaatgcaccaccttacattatattgtaaaatcagatttattcat |
279 |
Q |
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| T |
31132734 |
tatcctacacgtcctcacattttcttttgggtgcaattcaccaccttacattatattgtaaaatcagatttattcat |
31132658 |
T |
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