View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6376_low_6 (Length: 274)
Name: NF6376_low_6
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 40232781 - 40232638
Alignment:
| Q |
111 |
tgatgttataacaactaagcaaacctcagaaataaaaatgcatccccagcaaccagcctcttagaactgacaaaaacactccaaccactctgcagcaaat |
210 |
Q |
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| T |
40232781 |
tgatgttataacaactaagcaaacctcagaaatataaatgcatccccagcaaccagcctcttagaactgacaaaaacactccaaccactctgcagcaaat |
40232682 |
T |
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| Q |
211 |
gtctacgcggttgacctgaaatcaattcacctcacacatcaaac |
254 |
Q |
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| T |
40232681 |
gtctacgcggttgacctgaaatcaattcacctcacacatcaaac |
40232638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40232887 - 40232839
Alignment:
| Q |
1 |
ctcattgcacgcctgacaccaactcgaagctccccattctcacctctgg |
49 |
Q |
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| T |
40232887 |
ctcattgcacgcctgacaccaactcgaagctccccattctcacctctgg |
40232839 |
T |
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