View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6376_low_8 (Length: 267)
Name: NF6376_low_8
Description: NF6376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6376_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 53464801 - 53464545
Alignment:
| Q |
1 |
ttttttgtctttgaaaattaatgtatgatattaattactaattattatttaagcatatatagtgttgtgagttgtgacccttatcaacaagcaaagtaga |
100 |
Q |
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| T |
53464801 |
ttttttgtctttgaaaattaatgtatgatattaattactaattattatttaagcatatatagtgttgtgagttgtgacccttatcaacaagcaaagtaga |
53464702 |
T |
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| Q |
101 |
gtttgaacttaaaccatgcagtgttccatcagatttccttctttagtattgcaaaatagacaagataaaccaccttgactagacgaaatagcgaacatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53464701 |
gtttgaacttaaaccatgcagtgttccatcagatttccttctttggtattgcaaaatagacaagataaaccaccttgactagacgaaatagcgaacatga |
53464602 |
T |
|
| Q |
201 |
ttgaagaccnnnnnnngcattttgtcttaaatcaaattaaggtgcactacacctatg |
257 |
Q |
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| T |
53464601 |
ttgaagacctttttttgcattttgtcttaaatcaaattaaggtgcactacacctatg |
53464545 |
T |
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