View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6377_high_2 (Length: 243)

Name: NF6377_high_2
Description: NF6377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6377_high_2
NF6377_high_2
[»] chr3 (16 HSPs)
chr3 (1-224)||(22631187-22631410)
chr3 (1-224)||(22636224-22636447)
chr3 (1-221)||(22632586-22632806)
chr3 (1-224)||(22358723-22358946)
chr3 (1-224)||(22368627-22368850)
chr3 (1-224)||(22468666-22468889)
chr3 (1-224)||(22443457-22443692)
chr3 (112-224)||(22431866-22431978)
chr3 (1-220)||(22437356-22437587)
chr3 (1-63)||(22638017-22638079)
chr3 (3-69)||(22354247-22354313)
chr3 (3-109)||(22459301-22459407)
chr3 (3-109)||(22482282-22482388)
chr3 (37-83)||(22372281-22372327)
chr3 (1-43)||(22371045-22371087)
chr3 (3-87)||(22207529-22207613)
[»] chr4 (1 HSPs)
chr4 (1-55)||(29611120-29611174)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22631410 - 22631187
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22631410 acatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgt 22631311  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||     
T  22631310 agaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatctttccacatggaagatgtcattgatgattatatcttccatgaggaacaacat 22631211  T
Q  201 tcttctgatcctggatgtgctgct 224  Q
     || ||||||||||||||||||||    
T  22631210 gctcctgatcctggatgtgctgct 22631187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22636447 - 22636224
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22636447 acatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggctgatgatgt 22636348  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||     
T  22636347 agaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacat 22636248  T
Q  201 tcttctgatcctggatgtgctgct 224  Q
     || |||||||||| |||||||||    
T  22636247 gctcctgatcctggttgtgctgct 22636224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22632806 - 22632586
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||  |||||||||||    
T  22632806 acatgattaggggtgtcccaaaagaaattgaagaattgaaagatgaacttgaaagaattgaagtcttcatcaacgatgtggatagaacagctgatgatgt 22632707  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22632706 agaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacattgaagatgtcattgatgattatatctttcttgaggaacaacaa 22632607  T
Q  201 tcttctgatcctggatgtgct 221  Q
    |||||||||||||||||||||    
T  22632606 tcttctgatcctggatgtgct 22632586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22358946 - 22358723
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| ||||||||||||||| ||||||| |||| ||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  22358946 acatgattaggggtgtcccaaaagaaattgaagaattgcaagaggaactagaaagaatagaagtcttcatcaacgatgcggataaaagggctgatgatgt 22358847  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||     
T  22358846 agaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttttcacatagaagatgtcattgatgattatatctttcttgaggaacaacat 22358747  T
Q  201 tcttctgatcctggatgtgctgct 224  Q
     || ||||||||||||||||||||    
T  22358746 gctcctgatcctggatgtgctgct 22358723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22368850 - 22368627
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||    
T  22368850 acatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagcattgaagacttcatcaacgatgcggatagaagatctgatgatgt 22368751  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||    
T  22368750 agaagacaagaaaatcaaagacatgacgaagcagctgatagaaacatcttttcacatagaagatgtcattgatgattatatcttccttgaggaacatcaa 22368651  T
Q  201 tcttctgatcctggatgtgctgct 224  Q
    |||||||| |||||||||||||||    
T  22368650 tcttctgaacctggatgtgctgct 22368627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22468889 - 22468666
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||| |||||||||||    
T  22468889 acatgattaggggtaacccgaaagaaattgtagaattgaaagatgaactagaaagcattgaagacttcatcaacgatgcggatagaagagctgatgatgt 22468790  T
Q  101 agaagacaagaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||  |||||||||||||||| |||||||||||||||    
T  22468789 agaagacaagaaaatcaaagacatgatcaagcagctgatagaagcatcttatcacatagaagatgtggttgatgattatatcttacttgaggaacaacaa 22468690  T
Q  201 tcttctgatcctggatgtgctgct 224  Q
    ||||||||||||||||||||||||    
T  22468689 tcttctgatcctggatgtgctgct 22468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22443692 - 22443457
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||   |||| |||| |||| ||||||| |||||||| ||     
T  22443692 acatgattaagggtgtcccaaaagaaattgcagaattgaaagatgaactagaaagaattgaaaaattcatcaacaatgcagatagaatggctgatgctga 22443593  T
Q  101 agaagaca------------agaaaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttctt 188  Q
    |||||||             ||||||||||||  |||||||| ||| |||| ||||||||||| || || |||||||||||||||||||||||||| |||    
T  22443592 agaagacgtggaaacaagtcagaaaatcaaagcaatgatcaaacagttgatagaagcatcttttcatatagaagatgtcattgatgattatatcttcctt 22443493  T
Q  189 gaggaacaacaatcttctgatcctggatgtgctgct 224  Q
    || ||||| ||||||||||||| |||||||||||||    
T  22443492 gaagaacatcaatcttctgatcttggatgtgctgct 22443457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 22431978 - 22431866
Alignment:
Q  112 aaatcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttcttgaggaacaacaatcttctgatcc 211  Q
    |||||||||  | |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  22431978 aaatcaaagcaaagatcaaacagctgatagaagcatcttttcacatagaagatgtcattgatgattatatcttccttgaagaacaacaatcttctgatcc 22431879  T
Q  212 tggatgtgctgct 224  Q
    |||||| ||||||    
T  22431878 tggatgcgctgct 22431866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 22437587 - 22437356
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgt 100  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| || || || |||| ||||| || | |||  ||||||   |||||||| |     
T  22437587 acatgattaggggtgtcccaaaagaaattgcagatttgaaagatgaactagagagcatggaagacttcatcagcaatgaagatagattcgctgatgaaga 22437488  T
Q  101 agaagacaagaaaa------------tcaaagacatgatcaagcagctgattgaagcatctttccacatggaagatgtcattgatgattatatctttctt 188  Q
    ||||||||| ||||            ||||||  | ||| ||| |||| || |||||||||||  |||| |||||||||||||||||||||||||| | |    
T  22437487 agaagacaaaaaaagaagtgatgcaatcaaagcaaggatgaagaagctaatagaagcatcttttgacatagaagatgtcattgatgattatatcttccat 22437388  T
Q  189 gaggaacaacaatcttctgatcctggatgtgc 220  Q
    |||||||||||| || ||||||||||||||||    
T  22437387 gaggaacaacaagctcctgatcctggatgtgc 22437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22638079 - 22638017
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaag 63  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22638079 acatgattaggggtgtcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaag 22638017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 22354313 - 22354247
Alignment:
Q  3 atgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttca 69  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  22354313 atgattagggttgtcccaaaagaaattgcagaattgaaagaggaacttgaaagcattgaagacttca 22354247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 22459407 - 22459301
Alignment:
Q  3 atgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgtag 102  Q
    |||||||||||| |||||||||||||| ||||  ||||||| ||||||||||| ||||||  ||||| |||| |||| |||||||  ||||||| || ||    
T  22459407 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22459308  T
Q  103 aagacaa 109  Q
    | |||||    
T  22459307 atgacaa 22459301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 22482388 - 22482282
Alignment:
Q  3 atgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaagggctgatgatgtag 102  Q
    |||||||||||| |||||||||||||| ||||  ||||||| ||||||||||| ||||||  ||||| |||| |||| |||||||  ||||||| || ||    
T  22482388 atgattaggggtgtcccaaaagaaatttcagacatgaaagaagaacttgaaagcattgaaaacttcatcaacaatgcagatagaatagctgatgctgaag 22482289  T
Q  103 aagacaa 109  Q
    | |||||    
T  22482288 atgacaa 22482282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 22372281 - 22372327
Alignment:
Q  37 tgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggat 83  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  22372281 tgaaagatgaactagaaagaattgaagtcttcatcaacgatacggat 22372327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22371087 - 22371045
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaaga 43  Q
    |||||||||| | |||||||||||||||||||||| |||||||    
T  22371087 acatgattagcgctatcccaaaagaaattgcagaactgaaaga 22371045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 22207529 - 22207613
Alignment:
Q  3 atgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaagaattgaagtcttcaccaacgatgcggatagaa 87  Q
    ||||| || ||| ||||||||||| |||||||  ||||| ||||||| ||||| ||||||| ||||| |||| || | |||||||    
T  22207529 atgataagaggtgtcccaaaagaagttgcagacatgaaaaatgaactagaaagcattgaagacttcatcaacaatacagatagaa 22207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29611174 - 29611120
Alignment:
Q  1 acatgattaggggtatcccaaaagaaattgcagaattgaaagatgaacttgaaag 55  Q
    |||||||||||||| |||||||||||||||  ||  |||||||||||||||||||    
T  29611174 acatgattaggggtgtcccaaaagaaattgtggacatgaaagatgaacttgaaag 29611120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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