View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_high_13 (Length: 346)
Name: NF6378_high_13
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 2892318 - 2891982
Alignment:
| Q |
1 |
cattcaatttattgaattgattgatattgttaccattcatttgtccagctagacatatcattccactcagcaaatacaagaagaaagttaaatatactaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892318 |
cattcaatttattgaattgattgatattgttaccattcatttggccagctagatatatcattccactcagcaaatacaagaagaaagttaaatatactaa |
2892219 |
T |
|
| Q |
101 |
tccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccggggatgacaaatatcaacatgttgatgattatgattatgttttaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892218 |
tccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccagggatgacaaatatcaacatgttgatgattatgattatgttttaggt |
2892119 |
T |
|
| Q |
201 |
ataaatatatacattcatgatcatnnnnnnnnnnnnnnnnnnnnnnnnnctggatcttaattggtgttattgctttccagttaagtacgaagcacgtctt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2892118 |
ataaatatatacattcatgatcatatttcattttttattttctcattttctggatcttaattggtgttattgctttgcagttaagtacgaagcacgtctt |
2892019 |
T |
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| Q |
301 |
gatgatggaactcttgttagaaaatctgatgatgatg |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2892018 |
gatgatggaactcttgttagaaaatctgatgatgatg |
2891982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 3158269 - 3158475
Alignment:
| Q |
1 |
cattcaatttattgaattgattgatattgttaccattcatttgtccagctagacatatcattccactcagcaaatacaagaagaaagttaaatatactaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158269 |
cattcaatttattgaattgattgatattgttaccattcatttggccagctagatatatcattccactcagcaaatacaagaagaaagttaaatatactaa |
3158368 |
T |
|
| Q |
101 |
tccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccggggatgacaaatatcaacatgttgatgattatgattatgttttaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158369 |
tccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccggggatgacaaatatcaacatgttgatgattatgattatgttttaggt |
3158468 |
T |
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| Q |
201 |
ataaata |
207 |
Q |
| |
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||||||| |
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| T |
3158469 |
ataaata |
3158475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 2793994 - 2794116
Alignment:
| Q |
102 |
ccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccggggatgacaaatatcaacatgttgatgattatgattatgttttaggta |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
2793994 |
ccggaggatatttgtaaggatggaggtttggtgaagaagacactcaagcccggggatgacaaatgtcaacattttgatgattatgattatgttttaggta |
2794093 |
T |
|
| Q |
202 |
taaatatatacattcatgatcat |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
2794094 |
taaatatatacattcatgatcat |
2794116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 2877752 - 2877636
Alignment:
| Q |
102 |
ccggaggatatttgtaaggatggaggtttggtaaagaagatactcaagcccggggatgacaaatatcaacatgttgatgattatgattatgttttaggta |
201 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2877752 |
ccggaggatatttgtaaggatggaggtttggtaaaaaagatactcaagcccggggatgacaaatatcaacatgttgatgat------tatgttttaggta |
2877659 |
T |
|
| Q |
202 |
taaatatatacattcatgatcat |
224 |
Q |
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|
|||||| |||||||||||||||| |
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| T |
2877658 |
taaataaatacattcatgatcat |
2877636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 3158514 - 3158601
Alignment:
| Q |
250 |
ctggatcttaattggtgttattgctttccagttaagtacgaagcacgtcttgatgatggaactcttgttagaaaatctgatgatgatg |
337 |
Q |
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|
||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3158514 |
ctggatcttaattggtgttattgctctgcagttaagtacgaagcacttcttgatgatggaactcttgttagaaaatctgatgatgatg |
3158601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 2794134 - 2794217
Alignment:
| Q |
250 |
ctggatcttaattggtgttattgctttccagttaagtacgaagcacgtcttgatgatggaactcttgttagaaaatctgatgat |
333 |
Q |
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|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2794134 |
ctggatcttaattgttgttattgctttgcagttaagtacgaagcacgtcttgatgatggaactcttgttaaaaaatctgatgat |
2794217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 2877607 - 2877527
Alignment:
| Q |
253 |
gatcttaattggtgttattgctttccagttaagtacgaagcacgtcttgatgatggaactcttgttagaaaatctgatgat |
333 |
Q |
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|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2877607 |
gatcttaattggtgttattgctttgcagttaagtatgaagcacgtcttgatgatggaactcttgttaaaaaatctgatgat |
2877527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 2877904 - 2877820
Alignment:
| Q |
19 |
gattgatattgttaccattcatttgtccagctagacatatcattccactcagcaaatacaagaagaaagttaaatatactaatcc |
103 |
Q |
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|
|||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||||| |||| |||||||| |
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| T |
2877904 |
gattcatattgttaccattcatttggccagctagatatatcatgccactcagcaatttcaagaagaaagttgaatacactaatcc |
2877820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 2793842 - 2793926
Alignment:
| Q |
19 |
gattgatattgttaccattcatttgtccagctagacatatcattccactcagcaaatacaagaagaaagttaaatatactaatcc |
103 |
Q |
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|
||||||||||||||||||||||||| ||||||||| ||||||||||||||| || || || ||||| ||| |||| |||||||| |
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| T |
2793842 |
gattgatattgttaccattcatttggccagctagatatatcattccactcaacagattcagtaagaatgttgaatacactaatcc |
2793926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 8626906 - 8626959
Alignment:
| Q |
278 |
cagttaagtacgaagcacgtcttgatgatggaactcttgttagaaaatctgatg |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
8626906 |
cagttaagtacgaagcacgtcttgatgatggaacgcttgtaaaaaaatctgatg |
8626959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 3506852 - 3506811
Alignment:
| Q |
108 |
gatatttgtaaggatggaggtttggtaaagaagatactcaag |
149 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
3506852 |
gatatatgcaaggatggaggtttgttaaagaagatactcaag |
3506811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 3506677 - 3506625
Alignment:
| Q |
278 |
cagttaagtacgaagcacgtcttgatgatggaactcttgttagaaaatctgat |
330 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||| |
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| T |
3506677 |
cagttaagtacgaagcacgtctctatgatggaacgcttgtagcaaaatctgat |
3506625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 17198240 - 17198200
Alignment:
| Q |
109 |
atatttgtaaggatggaggtttggtaaagaagatactcaag |
149 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||| |
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| T |
17198240 |
atatatgtaaggatggaggtttgttaaagaagatactcaag |
17198200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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