View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_high_14 (Length: 330)
Name: NF6378_high_14
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 2949827 - 2949530
Alignment:
| Q |
18 |
caactctcaagcatccaaccggaagttttactcttcctttcaaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaa |
117 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2949827 |
caactctcaagcatccacccggaagttttactcttcctttcaaaaatcagacgcctttctgtcagagaaaatagtgaggatcccaaagagaacactttaa |
2949728 |
T |
|
| Q |
118 |
ctgctgtatctatttcaagcgagatcaactttgagacaaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949727 |
ctgctgtatctatttcaagcgagatcaactttgagacaagtagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatga |
2949628 |
T |
|
| Q |
218 |
cgaacaggaatgcagctactacatgtggaagcaaaagtttcctgtcaagttggagaacgttgtggaaaggagaatgggtgtggaagagtgtgttgtga |
315 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2949627 |
cgaacaggaatgcagctactacatatggaagcaaaagtttcctgtcaagttggagaacgttgtggaaaggagaatgggtgtggaagagtgtgttgtga |
2949530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 36 - 315
Target Start/End: Complemental strand, 2933174 - 2932895
Alignment:
| Q |
36 |
ccggaagttttactcttcctttcaaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactgctgtatctatttcaa |
135 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||||||||||||| | | |||||||||||| |||||| | ||||| ||||||||||||||| |
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| T |
2933174 |
ccggaagttttactgttccttttaaaaatcagacatctttctgtcagagaagacaacgaggatcccaaaaagaacactgtaacttctgtatctatttcaa |
2933075 |
T |
|
| Q |
136 |
gcgagatcaactttgagacaaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacgaacaggaatgcagcta |
235 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||||||||||||||| || ||||||| |||||||| | || ||||||| || ||||| |||| |
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| T |
2933074 |
gcgagatcgactttgtgacaaggaaaaacatggatgctgaatcttacacaatcaatctatctgcaggggaaaagagtagtgacgaaaagaaatgctgcta |
2932975 |
T |
|
| Q |
236 |
ctacatgtggaagcaaaagtttcctgtcaagttggagaacgttgtggaaaggagaatgggtgtggaagagtgtgttgtga |
315 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || || ||||||||||||| || |||||||||||||||||||| |
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| T |
2932974 |
ttacatgtggaaacaaaagtttcctgtcaagttgcaaaatgtggtggaaaggagaaaggatgtggaagagtgtgttgtga |
2932895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 315
Target Start/End: Original strand, 3009617 - 3009878
Alignment:
| Q |
54 |
ctttcaaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactgctgtatctatttcaagcgagatcaactttgaga |
153 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||| || | |||| ||| |||||| | |||| |||||||||||||||||||||| ||||||| || |
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| T |
3009617 |
ctttcgaaaattagacacctttctgtaagagaaggtaataaggacttcaaccagaacactgcaacttctgtatctatttcaagcgagattaactttgtga |
3009716 |
T |
|
| Q |
154 |
caaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacgaacaggaatgcagctactacatgtggaagcaaaa |
253 |
Q |
| |
|
|||||| ||||||| ||||| | || |||||||||||| ||||| |||| |||| | || || || |||| ||||| |||||||||||||||||||| |
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| T |
3009717 |
caaggaaaaacatgaatgctaagtcatacacaatccatctatctacgggagaaagtagtagggataaaaaggagtgcagttactacatgtggaagcaaaa |
3009816 |
T |
|
| Q |
254 |
gtttcctgtcaagttggagaacgttgtggaaaggagaatgggtgtggaagagtgtgttgtga |
315 |
Q |
| |
|
||||||||||||| |||| || || ||||||||||||| ||||||||||||||||||||||| |
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| T |
3009817 |
gtttcctgtcaagctggaaaatgtggtggaaaggagaaggggtgtggaagagtgtgttgtga |
3009878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 2923794 - 2923581
Alignment:
| Q |
51 |
ttcctttcaaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactgctgtatctatttcaagcgagatcaactttg |
150 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||| ||||||| |||||||| |||||| | |||||| ||| ||||||||||| ||||| ||||| | |
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|
| T |
2923794 |
ttccttacgaaaatcagacacctttctgtcagggaagttagtgagaatcccaaacagaacactgtaactgatgtgtctatttcaagtgagattaacttcg |
2923695 |
T |
|
| Q |
151 |
agacaaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacgaacaggaatgcagctactacatgtggaagca |
250 |
Q |
| |
|
||| || | ||||||| |||||||||| |||||||||||| | ||||| | ||||| | | ||| || |||||||||||||||||||||||||||| |
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|
| T |
2923694 |
tgactagaaaaaacatgaatgctgaatcctacacaatccatctctctgcagaagaaaatagtgatgctgagaaggaatgcagctactacatgtggaagca |
2923595 |
T |
|
| Q |
251 |
aaagtttcctgtca |
264 |
Q |
| |
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||||||||| |||| |
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|
| T |
2923594 |
aaagtttccggtca |
2923581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 37798641 - 37798435
Alignment:
| Q |
58 |
caaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactgctgtatctatttcaagcgagatcaactttgagacaag |
157 |
Q |
| |
|
||||||| ||||||||||| ||||||||| | ||| |||||| | |||||| | ||||||||||||||||||||||||| || ||||| | ||| || |
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|
| T |
37798641 |
caaaaataagacacctttcagtcagagaagttgctgaaaatcccacacagaacactataactgctgtatctatttcaagcgaaataaacttcgtgacgag |
37798542 |
T |
|
| Q |
158 |
gagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacgaacaggaatgcagctactacatgtggaagcaaaagttt |
257 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| | ||| | ||||| | |||||| | ||||| || | || |||||||||||||||||||||||||| ||| |
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| T |
37798541 |
gaaaaacatgaatgctgagtcttacacactgcatctctctgcagaggaaaatagtaatgctgagaaagagtgcagctactacatgtggaagcaaaaattt |
37798442 |
T |
|
| Q |
258 |
cctgtca |
264 |
Q |
| |
|
|| |||| |
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|
| T |
37798441 |
ccggtca |
37798435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 4913695 - 4913989
Alignment:
| Q |
21 |
ctctcaagcatccaaccggaagttttactcttcctttcaaaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactg |
120 |
Q |
| |
|
||||||||||| || || ||| ||||| ||||||||||| |||||| || |||||||||||||| ||| |||||| |||||| | | | ||||| |
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|
| T |
4913695 |
ctctcaagcattcacccagaaattttatcgttcctttcaaagatcagagacttttctgtcagagaagataatgaggaccccaaaatggaatctgtaacta |
4913794 |
T |
|
| Q |
121 |
ctgtatctatttcaagcgagatcaactttgagacaaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacga |
220 |
Q |
| |
|
|||||||||||||||||||||| |||| || | ||| | |||| || ||||||| |||||||| ||||||||||||||||||||||| |||||| || |
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|
| T |
4913795 |
ctgtatctatttcaagcgagattaactctgcggcaaaaaaaaacttgaatgctgagtcttacactatccatttatctgcgggggaaaatggtaatgatga |
4913894 |
T |
|
| Q |
221 |
acaggaatgcagctactacatgtggaagcaaaagtttcctgtcaagttggagaacgttgtggaaaggagaatgggtgtggaagagtgtgttgtga |
315 |
Q |
| |
|
| | | |||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||||||| |||||||||| |
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|
| T |
4913895 |
aaaagtatgcagctactacatgtgaaagcaaaagtttcctgtcaagttggaaaatgtggtggaaaggagaatgggcgtggaagactgtgttgtga |
4913989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 271
Target Start/End: Original strand, 1503932 - 1504143
Alignment:
| Q |
60 |
aaaatcagacacctttctgtcagagaaaatagtgaggatcccaaagagaacattttaactgctgtatctatttcaagcgagatcaactttgagacaagga |
159 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||| |||| | ||||||| |||||||||||||||||||| || |||| ||| |||| |
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|
| T |
1503932 |
aaaatcagacacctttctgtcagagaagttaatgaggaccccaaacagaataccgtaactgccgtatctatttcaagcgagattaattttgtgactagga |
1504031 |
T |
|
| Q |
160 |
gaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataatgacgaacaggaatgcagctactacatgtggaagcaaaagtttcc |
259 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| | || || | |||||| | | | | || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
1504032 |
aaaacattaatgctgagtcttacacactccatctctccgccgaggaaaatagtgaagccgggaaggaatgcagctactacatgtggaagcaaaagtttcc |
1504131 |
T |
|
| Q |
260 |
tgtcaagttgga |
271 |
Q |
| |
|
|||| |||||| |
|
|
| T |
1504132 |
ggtcaggttgga |
1504143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 28027281 - 28027132
Alignment:
| Q |
115 |
taactgctgtatctatttcaagcgagatcaactttgagacaaggagaaacatggatgctgaatcttacacaatccatttatctgcgggggaaaacaataa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||| ||||||| ||||||| ||||||||| | || | || || | |||||| | ||| |
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|
| T |
28027281 |
taactgctgtatctatttcaagcgagattaacttcgtgacaaggaaaaacatgaatgctgagtcttacacactatatctctccgcagaggaaaatagtaa |
28027182 |
T |
|
| Q |
215 |
tgacgaacaggaatgcagctactacatgtggaagcaaaagtttcctgtca |
264 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28027181 |
taatgagaaggaatgcagctactacatgtggaagcaaaagtttccggtca |
28027132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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