View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_high_20 (Length: 269)
Name: NF6378_high_20
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 52832738 - 52832495
Alignment:
| Q |
10 |
attattctataatgtttgacaagttaattagaaattttatttctcacttttaatttcttattttcaaaaactagtttatgcttaaatggaaggcggtgcc |
109 |
Q |
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| T |
52832738 |
attattctataatgtttgacaagttaattagaaattttatttctcacttttaatttcttattttcaaaaactagtttatgcttaaatggaaggcagtgcc |
52832639 |
T |
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| Q |
110 |
aatgctagaaaatcttaaagcatatgatttcattctataaccaatagctttcatctaattaattaacatatgtactaatgttatatctgaggattgaaac |
209 |
Q |
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| T |
52832638 |
aatgctagaaaatcttaaagcatatgatttcattctataaccaatagctttcatctaattaattaacatatgtactaatgttatatctgaggattgaaac |
52832539 |
T |
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| Q |
210 |
ccagtcttctttttatcaaaagttgcattctcaatattgttatt |
253 |
Q |
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| T |
52832538 |
ccagtcttctttttatcaaaagttgcattctcaatattgttatt |
52832495 |
T |
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