View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6378_high_21 (Length: 264)
Name: NF6378_high_21
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 2892323 - 2892447
Alignment:
| Q |
7 |
aagaatataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtagcagcagcagctttcttcttgtattgaatc |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2892323 |
aagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtaggagcagcagctttcttcttgtattgaatc |
2892422 |
T |
|
| Q |
107 |
aaatcccattgtgtgatgtgtgtcc |
131 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2892423 |
aaatcccattgtgtgatgtgtgtcc |
2892447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 3158264 - 3158138
Alignment:
| Q |
7 |
aagaatataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtagcagcagcagctttcttcttgtattgaatc |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3158264 |
aagaaaataaaaaccttcatctaattaattgtatttgagaatagtattaccatcatattcatcagcagtaggagcagcagctttcttcttgtattgaatc |
3158165 |
T |
|
| Q |
107 |
aaatcccattgtgtgatgtgtgtccct |
133 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
3158164 |
aaatcccattgtgtgatgtgggtccct |
3158138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 2877933 - 2878056
Alignment:
| Q |
15 |
aaaaaccttcatctaattaattgtatttgagaa-----tagtattaccatcatattcatcagcagtagcagcagcagctttcttcttgtattgaatcaaa |
109 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
2877933 |
aaaaaccttaacctaattaattgtatttgagaatagaatagtattaccatcatattcttcagcagaaggagcagcagctttcttcttgtattgaatcaaa |
2878032 |
T |
|
| Q |
110 |
tcccattgtgtgatgtgtgtccct |
133 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2878033 |
tcccattgtgtgatgtgtgtccct |
2878056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 2793830 - 2793793
Alignment:
| Q |
13 |
ataaaaaccttcatctaattaattgtatttgagaatag |
50 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2793830 |
ataaaaaccttaatctaattaattgtatttgagaatag |
2793793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University