View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_high_24 (Length: 251)
Name: NF6378_high_24
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 45043619 - 45043371
Alignment:
| Q |
13 |
aatatcaatgtcgtgtgcactcaaaatctcatgattgcacgcagttagccatatactagactaagtttgatattttagatttaaaaaataaaatcactat |
112 |
Q |
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| T |
45043619 |
aatatcaatgtcatgtgcagtcaaaatctcatgactgcacgcagttagccatatactagattaagttcggtattttagaattaaaaaataaaatcactat |
45043520 |
T |
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| Q |
113 |
taaaatttaaatcgtttgatttcaattggataattcatatgtcacaacaattcaattcgtagaatcaatgatttgtcgatttttattttagtgatatata |
212 |
Q |
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| T |
45043519 |
taaaatttgaatcgtttgatttcaattggacaattcatatgtgacaacaatccaattcgtagaatcaatgatttctcgatttttattttagtgatatata |
45043420 |
T |
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| Q |
213 |
----------tatacttagattgtattttaaaatttttgcaggggttga |
251 |
Q |
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| T |
45043419 |
tatatatatatatacttagattgtattttaataattttgcaggggttga |
45043371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 46175725 - 46175483
Alignment:
| Q |
13 |
aatatcaatgtcgtgtgcactcaaaatctcatgattgcacgcagttagccatatactagactaagtttgatattttagatttaaaaaataaaatcac--- |
109 |
Q |
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| T |
46175725 |
aatatcaatgttgtgtgcggtcacaatcttaggactgcacacacttagtcatatattagactaaattcgatattttagatttaaaaaataaaataaaatc |
46175626 |
T |
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| Q |
110 |
--tattaaaatttaaatcgtttgatttcaattggataattcatatgtcacaacaat-tcaattcgtagaatcaatgatttgtcgatttttattttagtga |
206 |
Q |
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| T |
46175625 |
tatattaaaatttgaatcgtctaattttaattggacaattcagatataacaacaatctaaattcgtagaatcaatgatttgtcgatttttattttagtga |
46175526 |
T |
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| Q |
207 |
tatatatatacttagattgtattttaaaatttttgcaggggttga |
251 |
Q |
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| T |
46175525 |
tata--tatactaagactgtattttaataattttgcaggggttga |
46175483 |
T |
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