View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_high_5 (Length: 493)
Name: NF6378_high_5
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 278 - 475
Target Start/End: Original strand, 6752627 - 6752824
Alignment:
| Q |
278 |
atgtggaagaaggaaggtatgaaatattggagcaagatacacatgtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaat |
377 |
Q |
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| T |
6752627 |
atgtggaagaaggaaggtatgaaatattggaccaagatacacatgtaatggctacggaagaaataagcaaaggatccaacatgtgtaataagcatgaaat |
6752726 |
T |
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| Q |
378 |
taataatacaagtggtgtccacataaataatgatggttccaaggctagtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcact |
475 |
Q |
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| T |
6752727 |
taataatacaagtggtgtccacataaataaggatggttccaaggctagtgcaaatgtcaactccatggctatggaaacgacgtagactgaggtgcact |
6752824 |
T |
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 424 - 475
Target Start/End: Complemental strand, 1811761 - 1811710
Alignment:
| Q |
424 |
agtgcaaatgttaactccatggctatggaaacgacgtagactgaggtgcact |
475 |
Q |
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| T |
1811761 |
agtgcaaatgttaattccatggctatggaaacgacgtagactgaggtgcact |
1811710 |
T |
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