View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_10 (Length: 408)
Name: NF6378_low_10
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 35060006 - 35059634
Alignment:
| Q |
14 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35060006 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacaca--gacattttttcatat |
35059909 |
T |
|
| Q |
114 |
cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059908 |
cattaactacttacc-tattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
35059810 |
T |
|
| Q |
214 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35059809 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaagat |
35059710 |
T |
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| Q |
314 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctatt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35059709 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctatt |
35059634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 43021308 - 43020938
Alignment:
| Q |
14 |
attattctacagcaaatcttgtttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43021308 |
attattctacagcaaatcttgtttgataaagcagaatatgttgtggattttcataaaataattgcaaagcactgctttacacaaagacatttttgcatat |
43021209 |
T |
|
| Q |
114 |
cattaactacttaccctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgca |
213 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43021208 |
cattaactactta-cctattgaatatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattcttttggca |
43021110 |
T |
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| Q |
214 |
tgtggaactatgcagtgcttgagactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggat |
313 |
Q |
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||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||| ||| |
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| T |
43021109 |
tgt-gaactatgcagtgcttaagactcatccgagt---ttattgtcttattgcttttaatgagtttatttctttcatggaacaggaacttatccaaagat |
43021014 |
T |
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| Q |
314 |
cgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctatt |
389 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||| | |||||||||| ||||||| |||||||||| |
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|
| T |
43021013 |
cgagaatttggtagagatgtgagtagtgttggagatgtttcttcatcgaaaccaaaagcagtatgtactttctatt |
43020938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 389
Target Start/End: Complemental strand, 42810459 - 42810116
Alignment:
| Q |
36 |
ttgataaagcagaatatgttgcggattttcataaaataattgcaaagcactgctttacacaaagacattttttcatatcattaactacttaccctattga |
135 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||| | || ||| |
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| T |
42810459 |
ttgataaagcagaatatgttgtggattttcataaaataattgtaaagcactgctttacac-aagacatttttccatgtcattaactactta-catagtga |
42810362 |
T |
|
| Q |
136 |
atatagtttcgaacttttatggttgacagagtaacatattgtaaaaggatgatagatgttatcattattctttttgcatgtggaactatgcagtgcttga |
235 |
Q |
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|| ||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||| ||||||| | |
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| T |
42810361 |
atttagtttccaacttttatgattggcagagtaacatattgtaaaaggatgata-atgttatcactattctttttgcat-ttgaactatggagtgcttaa |
42810264 |
T |
|
| Q |
236 |
gactcatccgagtttattattgtcttattgcttttaatgagtttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtga |
335 |
Q |
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|| ||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42810263 |
gagtcatcgaagt------ttgtcttattgcttttaatgagtttaattctttcatggaacagggacttatccaaagatcgagaatttggtagagatgtga |
42810170 |
T |
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| Q |
336 |
gcaatgttggagatgtttcttcgttgaaaccaaaaacagtatgcactttctatt |
389 |
Q |
| |
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| | |||||||||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
42810169 |
gtagtgttggagatgtttcttcgtcgaaaccaaaagcagtatgtactttctatt |
42810116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 41567405 - 41567531
Alignment:
| Q |
262 |
attgcttttaatgagtttaattcctacatggaacagggacttatccaaggatcgagaatttggtagagatgtgagcaatgttggagatgtttcttcgttg |
361 |
Q |
| |
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|||| |||| || |||||| |||||| ||| |||||||| || |||||||||||||| |||||||| || ||||||| |||||| ||||||||||| | |
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| T |
41567405 |
attgtttttgattagtttatttccta-atgaaacagggatttctccaaggatcgagattttggtagggaagtgagcagtgttggggatgtttcttcaata |
41567503 |
T |
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| Q |
362 |
aaaccaaaaacagtatgcactttctatt |
389 |
Q |
| |
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||| ||||||| ||||| ||||| |||| |
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| T |
41567504 |
aaatcaaaaactgtatgtactttttatt |
41567531 |
T |
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