View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_12 (Length: 371)
Name: NF6378_low_12
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 54252741 - 54253099
Alignment:
| Q |
1 |
gaagggtggtgcatgtttgtttgtattggagttgaatggatgaatgaaactaagaagaattgtcgtaagagaagaaggcaagaaatgtggatgtattgaa |
100 |
Q |
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| T |
54252741 |
gaaggggggtgcatgtttgtttgtattggagttgaatggatgaatgaaactaagaagaattgtcgtaagagaagaaggcaagaaatgtggatgtattgaa |
54252840 |
T |
|
| Q |
101 |
aagggtgtttgttttttcaagaagcttactgcaactctctgcacaatggctgtcccactttgattgtctgtccaaacataatgtttatataatgtaatgt |
200 |
Q |
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| T |
54252841 |
aagggtgtttgttttttcaagaagcttactgcaactctctgcacaatggctgtcccactttgattgcctgtccaaacataatgtt--tataatgtaatgt |
54252938 |
T |
|
| Q |
201 |
aatgtggtcttggttgctagctagtaataataatttaatgtaaagaagaaaataaattgagaaaaaatgaatggttggtgaatgcttttttgtgtgtgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54252939 |
aatgtggtcttggttgctagctagtaataataatttaatgtaaagaagaaaataaattgagaaaaaatgaatggttggtgaatgcttttttgtgtgtgta |
54253038 |
T |
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| Q |
301 |
ctgtacggtttagggtatgtatggcattgggaagtttatttaattccttctactacctttg |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54253039 |
ctgtacggtttagggtatgtatggcattgggaagtttatttaattccttctactacctttg |
54253099 |
T |
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