View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_13 (Length: 356)
Name: NF6378_low_13
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 43132896 - 43133242
Alignment:
| Q |
1 |
tagcagttttaaccatatttacaggattatatcccacaaagactgcaaaaatctgaagatccagaatcgccgccatcgagttacggtaacatattcttaa |
100 |
Q |
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| T |
43132896 |
tagcagttttaaccatatttacaggattatatcccacaaagactgcaaaaatctgaagatccagaatcgccgccatcgagttacgataacatattcttaa |
43132995 |
T |
|
| Q |
101 |
atgaagatgaattcaacaagcctcccccagaattaccaccacaaataccagtgacaataacacaagaagaggcttcaacaagcaatattgatcaagtccc |
200 |
Q |
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| T |
43132996 |
atgaagatgaattcaacaagcctcccccagaattaccaccacaaataccagtgacaataacacaagaagaggcttcaacaagcaatattgatcaagtccc |
43133095 |
T |
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| Q |
201 |
tagttctacacatgtggatctaaatcatctatacatcaacaaatctgatggtgatcaatttgtaacactaagatcaactcataggtttcaacacaaattt |
300 |
Q |
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| T |
43133096 |
tagttctacacatgtggatctaaatcatctatacatcaacaaatctgatggtgatcaatttgtaacactaagatcaactcataggtttcaacacaaattt |
43133195 |
T |
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| Q |
301 |
gtcactacaatactttacaagtcccttcaaagggaaagatgatgatg |
347 |
Q |
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| T |
43133196 |
gtcactacaatactttacaagtcccttcaaagggaaagatgatgatg |
43133242 |
T |
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