View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_16 (Length: 319)

Name: NF6378_low_16
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_16
NF6378_low_16
[»] chr1 (3 HSPs)
chr1 (7-238)||(50436326-50436557)
chr1 (279-310)||(48325754-48325785)
chr1 (237-278)||(37843327-37843368)
[»] chr7 (2 HSPs)
chr7 (279-310)||(39875785-39875816)
chr7 (279-310)||(45209579-45209610)
[»] chr6 (2 HSPs)
chr6 (279-310)||(1196111-1196142)
chr6 (279-310)||(29643395-29643426)
[»] chr5 (2 HSPs)
chr5 (279-310)||(20719991-20720022)
chr5 (281-309)||(6529084-6529112)
[»] chr3 (2 HSPs)
chr3 (279-310)||(47849736-47849767)
chr3 (281-310)||(43883366-43883395)
[»] chr4 (3 HSPs)
chr4 (274-312)||(29525920-29525958)
chr4 (277-310)||(27384240-27384273)
chr4 (279-312)||(32713908-32713941)
[»] chr2 (1 HSPs)
chr2 (277-310)||(15141526-15141559)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 50436557 - 50436326
Alignment:
Q  7 taatgatggagttttcaggtgaccaagcgcgtggattctgatgataatgaaggtagtgtgtggaattggaggacggagggggatataatggtaaatggag 106  Q
    |||||||||| |||||||||||| |||||||||||| | |||||||| ||| | ||||  ||||||||||||||||||||||||||||||||||||||||    
T  50436557 taatgatggatttttcaggtgacaaagcgcgtggatacagatgataaagaatggagtggttggaattggaggacggagggggatataatggtaaatggag 50436458  T
Q  107 cgttctttgtaccgtcaggggtggggatgagtgctcagtatgcggaggcgtcaagtgtacagccaaaatccgtggagcaaattaaccagcttacaatgta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50436457 cgttctttgtaccgtcaggggtggggatgagtgctcagtatgcggaggcgtcaagtgtacagccaaaatccgtggagcaaattaaccagcttacaatgta 50436358  T
Q  207 ctctggtgtattcggtgatcccaggtactata 238  Q
    ||||||||||||||||||||||||||||||||    
T  50436357 ctctggtgtattcggtgatcccaggtactata 50436326  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 48325754 - 48325785
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  48325754 agaaaaagaaagagagagaataagagtataat 48325785  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 37843327 - 37843368
Alignment:
Q  237 tagtgatatttgaacaactatttgatattctttatgtgacaa 278  Q
    ||||||||||||||||||||||||||||  ||| ||||||||    
T  37843327 tagtgatatttgaacaactatttgatataatttgtgtgacaa 37843368  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 39875785 - 39875816
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  39875785 agaaaaagaaagagagagaataagagtataat 39875816  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 45209579 - 45209610
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  45209579 agaaaaagaaagagagagaataagagtataat 45209610  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 1196142 - 1196111
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  1196142 agaaaaagaaagagagagaataagagtataat 1196111  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 29643395 - 29643426
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  29643395 agaaaaagaaagagagagaataagagtataat 29643426  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 20719991 - 20720022
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  20719991 agaaaaagaaagagagagaataagagtataat 20720022  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 6529112 - 6529084
Alignment:
Q  281 aaaaagaaagagagagaataagagtataa 309  Q
    |||||||||||||||||||||||||||||    
T  6529112 aaaaagaaagagagagaataagagtataa 6529084  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 47849767 - 47849736
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||||    
T  47849767 agaaaaagaaagagagagaataagagtataat 47849736  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 43883395 - 43883366
Alignment:
Q  281 aaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||||||    
T  43883395 aaaaagaaagagagagaataagagtataat 43883366  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 29525958 - 29525920
Alignment:
Q  274 gacaaagaaaaagaaagagagagaataagagtataatct 312  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  29525958 gacagagaaaaagaaagagagagaataagaatataatct 29525920  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 27384273 - 27384240
Alignment:
Q  277 aaagaaaaagaaagagagagaataagagtataat 310  Q
    ||||||||||||||||||||||||||| ||||||    
T  27384273 aaagaaaaagaaagagagagaataagaatataat 27384240  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 32713941 - 32713908
Alignment:
Q  279 agaaaaagaaagagagagaataagagtataatct 312  Q
    ||||||||||||||||||||||| ||||||||||    
T  32713941 agaaaaagaaagagagagaataaaagtataatct 32713908  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 15141559 - 15141526
Alignment:
Q  277 aaagaaaaagaaagagagagaataagagtataat 310  Q
    |||||||||| |||||||||||||||||||||||    
T  15141559 aaagaaaaaggaagagagagaataagagtataat 15141526  T

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